Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77680 338 / 3e-107 Ribonuclease II/R family protein (.1) AT2G17510 109 / 8e-26 EMB2763 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014833 [exp] 544 / 0 AT1G77680 1033 / 0.0 Ribonuclease II/R family protein (.1) Lus10025614 [exp] 520 / 1e-176 AT1G77680 1048 / 0.0 Ribonuclease II/R family protein (.1) Lus10028065 [exp] 512 / 1e-174 AT1G77680 551 / 1e-179 Ribonuclease II/R family protein (.1) Lus10029500 [exp] 108 / 1e-25 AT2G17510 1543 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Lus10039601 [exp] 50 / 6e-07 AT2G17510 249 / 2e-77 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G174800 [exp] 403 / 7e-132 AT1G77680 1078 / 0.0 Ribonuclease II/R family protein (.1) Potri.002G086400 [exp] 395 / 8e-129 AT1G77680 1062 / 0.0 Ribonuclease II/R family protein (.1) Potri.007G059100 [exp] 111 / 1e-26 AT2G17510 1546 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00773 [flax] [poplar] RNB RNB domain
Representative CDS sequence Show only first row Show all	>Lus10009880 pacid=23180124 polypeptide=Lus10009880 locus=Lus10009880.g ID=Lus10009880.BGIv1.0 annot-version=v1.0 ATGATGGGGCCCTACAACTGGAAAGTTCAAAGGTTGTTTTTCTACTTGATGAGTATGGCATGCCATATGACTGTACCTTCAGTGAACAAAAGGAATCGAA TTCACTTGGAGGAGTTTATGCTTTTGGCTAATACGACAGCCGCAGAGATCATAAGCAGAGCTTTCCCGGAAACTGCGTTATTACGAAGACATCCTGAACC GAATCTGCGCAAGCTAAGAGAATTCGAAGCATTCTGTAGCAAGTATGGCTTTGTGTTGGATACTTCTTTGTCTAGTAAGCTCCATAGATCACTGGAGTGG ATCCGGGAGACACTTAAAGGTGATACAATGTTTATTGATATTCTCATCACTTATGCTACAAAGTCGATGCAGCTGGCAACATACTTCTGTAGTGGTGATC TGAAAACCGATGTTAATGACTGGGGTAATTATGCTTTGGCCGTCCCTCTATACACGCATTTTACATCACCATTACAGCGTTATTCTGATATCATAGTGCA TCGTACACTGAATGCAGTGCTTCAAGCTGGAAAATGTTACGTGAATCACCGTGAAAGCAAAATTTCTCGTGTATTTTTGAGAAATGATGATGTAACGAGG TGTTTTACTAGCATTAACTTCGACAGAGATGCAGCTGAATCATTGGATGGGCGGGAAGCATTGTTGGCTGCAGCTCTAAAACATAGACTCCCTTCTACAG ATTTACTTGCGGATCTAGCAGCGCATTGCAACGTCAGAAAACTGGCTAGCAGGCATGTCAAGGATTCCTGTAATAAGCTCTACATGTGGATGTTATTGAA GAAAAAGAAGGTTTTGTTGTCGGAAGCTAGAGTTGTAGGTCTCGGACTAAGGTTCATGTCTGTTTACATTCATAAACTTGCTCTTGTCTTGAAGATGGAA CGCCGAATACACTATGATGATGTCGAGGGGTTGTCGGCAGAATGGCTTGAAGCAACTTCGACCTTGGTGCTTAGCATATGCGCTATCAAAAGCTCTTCCA GAACGGAGGGTTCCAATTTCCGGAGGTCACTCAGCGAAGCGGCTTGGGTCGTAAACCCTTGTGACACGGAAGTAGACCCCACTTCGGGCTCCTGA
AA sequence Show only first row Show all	>Lus10009880 pacid=23180124 polypeptide=Lus10009880 locus=Lus10009880.g ID=Lus10009880.BGIv1.0 annot-version=v1.0 MMGPYNWKVQRLFFYLMSMACHMTVPSVNKRNRIHLEEFMLLANTTAAEIISRAFPETALLRRHPEPNLRKLREFEAFCSKYGFVLDTSLSSKLHRSLEW IRETLKGDTMFIDILITYATKSMQLATYFCSGDLKTDVNDWGNYALAVPLYTHFTSPLQRYSDIIVHRTLNAVLQAGKCYVNHRESKISRVFLRNDDVTR CFTSINFDRDAAESLDGREALLAAALKHRLPSTDLLADLAAHCNVRKLASRHVKDSCNKLYMWMLLKKKKVLLSEARVVGLGLRFMSVYIHKLALVLKME RRIHYDDVEGLSAEWLEATSTLVLSICAIKSSSRTEGSNFRRSLSEAAWVVNPCDTEVDPTSGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77680			Ribonuclease II/R family prote...		Lus10009880 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Lus10023960 [exp]	4.9	0.8314
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10006698 [exp]	10.8	0.8627
AT5G08630			DDT domain-containing protein ...		Lus10004282 [exp]	14.3	0.8452
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Lus10004784 [exp]	20.5	0.8290
AT1G67550		URE	urease (.1)		Lus10015814 [exp]	27.3	0.8386
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10029174 [exp]	36.1	0.8116
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10022383 [exp]	40.2	0.8281
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10030543 [exp]	53.7	0.7962
AT5G01470			S-adenosyl-L-methionine-depend...		Lus10004816 [exp]	55.0	0.8062
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10017682 [exp]	60.4	0.8163

Compare expression of checked genes

Lus10009880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.