Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08240 124 / 4e-37 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014834 [exp] 208 / 3e-70 AT4G08240 142 / 3e-44 unknown protein Lus10025615 [exp] 159 / 3e-51 AT4G08240 102 / 1e-28 unknown protein Lus10028066 [exp] 0 / 1 AT1G33390 1148 / 0.0 FASCIATED STEM 4, RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G086200 [exp] 127 / 2e-38 AT4G08240 152 / 2e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009881 pacid=23180138 polypeptide=Lus10009881 locus=Lus10009881.g ID=Lus10009881.BGIv1.0 annot-version=v1.0 ATGAAAGGAGTCGGAGGGCCGCTGCTTAACATCGGCGATCTGCTCAGCGATCTCGCCGAGAAAGACGAAGCTCAACAACAACAACAACCTCCTTCTTCTT CTTCTTCACGTGACGATCCATCTCCGACCGACTTTCCACCATCGACGGACCTCCTCAAGCTTTTCCAGGAAAACTACGAGCAGTTGAACGAGGCGCTCGA AGGGAGCGATCCTAATTGGACAGCCTTGACCTTAAAGCTCTGCACATGTCTTGAAACTGCGAACAAATTGGTTCGATCCGCAAACTCGAATGCTGACTCG CTGTGTGAGAAAGTCGCAGAGCTTGAGAAGCTTGTCAAGAGAGGGGATTCAGCAGTAGCAGCAGCTAAATCCATCCCTCTTTCACTTGGGATAATGTCCA GACTCCACACCTCCAGTCTTCCATCTGACCAAACTCACTAA
AA sequence Show only first row Show all	>Lus10009881 pacid=23180138 polypeptide=Lus10009881 locus=Lus10009881.g ID=Lus10009881.BGIv1.0 annot-version=v1.0 MKGVGGPLLNIGDLLSDLAEKDEAQQQQQPPSSSSSRDDPSPTDFPPSTDLLKLFQENYEQLNEALEGSDPNWTALTLKLCTCLETANKLVRSANSNADS LCEKVAELEKLVKRGDSAVAAAKSIPLSLGIMSRLHTSSLPSDQTH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08240			unknown protein		Lus10009881 [exp]	0	1
AT3G21865		PEX22	peroxin 22 (.1)		Lus10039690 [exp]	1.0	0.9382
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10042674 [exp]	1.4	0.9369
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10025933 [exp]	3.2	0.9310
AT3G51100			unknown protein		Lus10041813 [exp]	3.3	0.9199
AT3G25940			TFIIB zinc-binding protein (.1...		Lus10015458 [exp]	3.5	0.9313
AT4G14385			unknown protein		Lus10003559 [exp]	5.3	0.9233
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10042725 [exp]	5.5	0.9136
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10039656 [exp]	9.2	0.9033
AT4G08240			unknown protein		Lus10014834 [exp]	11.0	0.9230
AT3G51100			unknown protein		Lus10028362 [exp]	11.7	0.9010

Compare expression of checked genes

Lus10009881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.