Plant FIBer expression Database

Lus10009882 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G17690 684 / 0 NOF1 nucleolar factor 1, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014835
[exp]
1244 / 0 AT1G17690 688 / 0.0 nucleolar factor 1, unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G010000
[exp]
769 / 0 AT1G17690 766 / 0.0 nucleolar factor 1, unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06862 UTP25 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
Representative CDS sequence
>Lus10009882 pacid=23180200 polypeptide=Lus10009882 locus=Lus10009882.g ID=Lus10009882.BGIv1.0 annot-version=v1.0
ATGGCAGGGGTTAAAAGAAAGAAGTCGGCTGGGGATCTGAATGAAATTGTTGAATCTGGCAATGATTTGGAGTCTGTTGCAGTCGATGAAGAGCGTAACT
TGGGTGTGGATGCCCTCTCTGCTGTCGAGGATTCTTTGCAGAAAAGCTCTTTCCATTTACACTTGGAAAATGACTTGTCTCAAGAAGAGACTGAGCATCT
TTCCAAAAAGAAGTGGAAGTATAGCTGGGAAGTACCTTATTTTGAGTCGTCAAATTACAAGTGGGCGGGGACAGGAGAGTGCTGCTTAAAGACACAGGAA
ATGGACACTTCTACTATTGGTGTCAAGCAAAGTTTGTATAAGCATTGGCTAGATGTGTGCAAGGTGTCAGGAGATTTTGCTGCATCCAAACAGAGCGCTT
TCTTCAATATCTTTAACAGCTACAAGGATGTATTGCATTGTAACAAGAAACCTTTCTATCTCAAAGGGTATGGAGAAGACTCTTGCATTATGGACGCTTA
CCTAATGCATGCTTTGAATCACGTTTTTAAAAGCAGAGATCTAGTAAAAAAGAACGATACCAAAGTTGCTAAGCTTCAGGAGTCTTCTGAAAGTGAGTTG
CTTATTGATGATGCTGTTCGTGATCGAGGGTTTACTCGACCGAAGGTTTTGATCATCTTGCCCATTAGACACATAGCACTTCGTGTTGTGAGGAGGCTAA
TACAATTGACGCCTCAAGCTAACAAGGCAAATGTCGAGTATATGGATCGATTTCTTGCAAAGTTTGGATCTCAAGATGACCAAGCTCCTCTTGACGAGGA
AGAGGCGAAGCTCATCGGACAATTGATGTCTAAGAAGCCGCATAAGCCATCTGACTATGAAGCACTCTTTGGTGCGAATTCTGATGATGATTTTATGGTT
GGAATTAAGTTTACTAGGAAAAGCATAAAGTTATTTAGTGACTTTTATTCATCAGACGTCATTGTTGCTTCTCCTCTTGCTCTCTGGGCGAAAATCGAAA
AAGTCCGGGCCAAAACAGAAGAAGATTTTGATTATCTATCGGCTATTGAGGTTGCTGTTACTGATCATGCCGATGTAATAGCAATGCAAAACTGGGAGCA
TCTGGCAGTAGTTCTTGAACAATGTAACCGTATGCCGTCAAAGCAACACGGGACTGACATTATGCGAATCAGGAAGTGGCATCTGGATGGACAAGCTAAA
TTTTATCGACAAACGATCATGCTAGGTCACTATGTAAACCCAGATATCAATGCTTCATTTAGTAACTTGTGCTGCAATTATCAAGGAAAGATCAAGTCAG
TATGCGGGACTCATAAAGGTGTCCTTCCTAAAGTCCTACCAGAACTAAGACAGATTTACGAGCGCTTTGTTGTAGAATCAATTGCCGATGCTGATGATGC
CCGCCTTGATCATTTTATTAAAAAGGTAGCTCTAGAAGGAGTGTTCCCGAAGATCAAAGATTCCGAAGAGGGTGGGATCTTGATATTTATCAGTTCGTAT
TTCGAGTTTGTTAGAGTCCGCAACTTCCTGTTTTCTCAGAAGGCATCATTCTGCCTTCTTGGAGATAATACTCAGCCTAAAGATGTGAGTCGTGCTCGGA
ATTTCTTTATCCAAGGAAAGCATAAGATCATACTTTACACAGAGAGGCTTCTGTTCTTCCGCAGATACAAGATCCGCGGCGTAAAAGAGTTGATCATGTA
TTCGCTTCCTGAAAGGAAGGAGTTCTATCCTGAGGTAGTTAACATGCTTGAAGGGGCCAATAATATGTCCTGCACAGTGCTCTTTTCCAAGTTGGACTGG
CTGCGGCTGGAGAGGATTATAGGAACTGCTTCCGCGAAACGGATGGTTACATCAGAGAAGCCTGTCTTTGTATTGTGCTGA
AA sequence
>Lus10009882 pacid=23180200 polypeptide=Lus10009882 locus=Lus10009882.g ID=Lus10009882.BGIv1.0 annot-version=v1.0
MAGVKRKKSAGDLNEIVESGNDLESVAVDEERNLGVDALSAVEDSLQKSSFHLHLENDLSQEETEHLSKKKWKYSWEVPYFESSNYKWAGTGECCLKTQE
MDTSTIGVKQSLYKHWLDVCKVSGDFAASKQSAFFNIFNSYKDVLHCNKKPFYLKGYGEDSCIMDAYLMHALNHVFKSRDLVKKNDTKVAKLQESSESEL
LIDDAVRDRGFTRPKVLIILPIRHIALRVVRRLIQLTPQANKANVEYMDRFLAKFGSQDDQAPLDEEEAKLIGQLMSKKPHKPSDYEALFGANSDDDFMV
GIKFTRKSIKLFSDFYSSDVIVASPLALWAKIEKVRAKTEEDFDYLSAIEVAVTDHADVIAMQNWEHLAVVLEQCNRMPSKQHGTDIMRIRKWHLDGQAK
FYRQTIMLGHYVNPDINASFSNLCCNYQGKIKSVCGTHKGVLPKVLPELRQIYERFVVESIADADDARLDHFIKKVALEGVFPKIKDSEEGGILIFISSY
FEFVRVRNFLFSQKASFCLLGDNTQPKDVSRARNFFIQGKHKIILYTERLLFFRRYKIRGVKELIMYSLPERKEFYPEVVNMLEGANNMSCTVLFSKLDW
LRLERIIGTASAKRMVTSEKPVFVLC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G17690 NOF1 nucleolar factor 1, unknown pr... Lus10009882
[exp]
0 1
AT1G72550 tRNA synthetase beta subunit f... Lus10020531
[exp]
13.0 0.7770
AT5G11240 transducin family protein / WD... Lus10020907
[exp]
16.9 0.8122
AT1G13160 ARM repeat superfamily protein... Lus10036950
[exp]
21.5 0.7927
AT5G67240 SDN3 small RNA degrading nuclease 3... Lus10011504
[exp]
25.8 0.7942
AT5G60040 NRPC1 nuclear RNA polymerase C1 (.1.... Lus10015971
[exp]
29.7 0.8027
AT3G22450 Ribosomal L18p/L5e family prot... Lus10010558
[exp]
44.2 0.7710
AT3G01160 unknown protein Lus10041866
[exp]
44.9 0.7528
AT3G07050 NSN1 nucleostemin-like 1, GTP-bindi... Lus10018858
[exp]
51.4 0.7775
AT3G13460 ECT2 evolutionarily conserved C-ter... Lus10020269
[exp]
52.0 0.7523
AT3G07610 IBM1 increase in bonsai methylation... Lus10015260
[exp]
53.6 0.7814

Lus10009882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.