Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39940 479 / 8e-165 COI1 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) AT4G03190 179 / 2e-49 ATGRH1, ATGER1, AFB1, GRH1 AUXIN SIGNALING F BOX PROTEIN 1, GRR1-like protein 1 (.1) AT1G12820 165 / 1e-44 IPS1, AFB3 auxin signaling F-box 3 (.1) AT3G62980 165 / 3e-44 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) AT3G26810 163 / 6e-44 AFB2 auxin signaling F-box 2 (.1) AT5G49980 159 / 5e-42 AFB5 auxin F-box protein 5 (.1) AT4G24390 152 / 9e-40 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2) AT3G07550 61 / 1e-09 RNI-like superfamily protein (.1.2) AT1G21410 43 / 0.0004 SKP2A F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014836 [exp] 723 / 0 AT2G39940 827 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Lus10028265 [exp] 620 / 0 AT2G39940 816 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Lus10040224 [exp] 610 / 0 AT2G39940 816 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Lus10035160 [exp] 154 / 2e-40 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1) Lus10035161 [exp] 152 / 4e-40 AT3G26810 770 / 0.0 auxin signaling F-box 2 (.1) Lus10011262 [exp] 152 / 9e-40 AT3G62980 588 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10018426 [exp] 150 / 1e-38 AT3G62980 634 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10020086 [exp] 149 / 1e-38 AT3G62980 644 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10011260 [exp] 144 / 3e-38 AT3G62980 397 / 2e-134 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G064400 [exp] 547 / 0 AT2G39940 794 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.010G192900 [exp] 543 / 0 AT2G39940 790 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.005G159300 [exp] 182 / 3e-50 AT5G49980 934 / 0.0 auxin F-box protein 5 (.1) Potri.002G102700 [exp] 172 / 1e-46 AT5G49980 911 / 0.0 auxin F-box protein 5 (.1) Potri.014G134800 [exp] 157 / 9e-42 AT3G62980 947 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.002G207800 [exp] 157 / 2e-41 AT3G62980 937 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.011G042400 [exp] 154 / 1e-40 AT3G62980 649 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.001G323100 [exp] 153 / 3e-40 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.017G061600 [exp] 152 / 7e-40 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.004G033900 [exp] 152 / 7e-40 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009883 pacid=23180175 polypeptide=Lus10009883 locus=Lus10009883.g ID=Lus10009883.BGIv1.0 annot-version=v1.0 ATGGAAGAGAATCGGAACATCGGGAGACTGGCCAGAATGAACAGTTTGGGGATGTCAGATGTTGTAATTGGTTGTGTGATGCCATACATCGACGACCCAC GGGACAGGGACGCCGTGTCTTTGGTCTGCCGGAGCTGGTACGAATTGGATGCTTTGACCCGGAAGCACGTCACTATTGCCCTTTGTTACACCACCAGCCC AAATCGGCTCCGGCGCCGCTTCAATCACCTCGAGTCCCTCAAGCTCAAAGGGAAACCCCGGGCCGCCATGTTCAATCTCATTCCCGAGGATTGGGGTGGC TTCGTCAGTCCGTGGGTCAACGAGATTGTCGAGTCTTTCAATTGCTTGAAGTCGGTCCACTTCAGGCGGATGATTGTCACGGATTCTGATATGGATCTCC TTGCCACGTCTCGTGGGAAAGCCTTGCATCACTTGAAGCTCGACAAGTGTTCTGGTTTCTCCACCGATGGCCTTCTTCAGGTTGCACGATTGTGCAGACA ATTGAGAACGTTGGTTTTGGAAGAGAGCATTATCTTGGAGAAAGATGGTGACTGGCTCCATGAGCTTGCTACACACAATAGTGTTCTTGAGACTCTGAAC TTCTACATGATAGACCTTGCAAAACTGAAGGTTGAAGACTTTGACCTCATAGCCAAAAACTGCAAATCCTTGATCTCTGTAAAGATTAATGATTGTGAAA TCCTAGATCTTATAGACTTCTTCCGAGTTGCTTCTTCCTTAGAAGAGTTTTGTGGTGGCTCATTTCCTGATCTACCTGAAGACGATGTACCAGACAGGCT GGATCTCCTCTACGCATTACTTGACACGGAGGATGATTGTCTTTTGATACAGAGGTACACCAATTTAGAAATCTTTGAGAACCTCAATGATTTTCGCTTG GTGCTTCTGGATAGAGAAGAGAAAATAGAAGATCTGCCCCTAGACAATGGAGTTGGGGCACTATTGAGCGGCTGTGTCAAGCTCCGGAGGTTCGCTCTAT ATCTGAGGCAAGGGGGGCTGATTGATCTGGGTATGAGTTATATAGGGCAATATAGTCAAAACATTAGGCGGATGCTTCTGGGTTATGTTGGGAATAATGA CGAGGGTCTTCGAGCTCTCTCGAGAGGATGCCCAAACCTGCAGAAACTTGAAATGAGGGGATGCTGCTTCAGCGAGAGTGCACTGGCTCGTGCTATGCTG CATCTGACTTCTCTAAGGTACTTGTGGGTGCAGGGTTGCCGACCATCACAACTTGGGCGCGACCTCCTAGCAATGGCTCGCCCATTTTGGAATATCGAGC TTATTCCTCCAAGGAAAGTGTTGGTGCCTAATGAAGGTGGAGAGATAGTGGTTGAGCATCCTGCACAAATACTTGCATCCAAGAACAGATTTTCCAGATA CTGTAATCCCCTTGGACCCACTAAGCTTTTAAGAAGTGACATCCCAGACATATTCAACCGACCGATCCAACACAAGGGGCGAATGTGGGGCCGAGCAGCC TTCTCGAGCTGGTACCTTGTCAATTAG
AA sequence Show only first row Show all	>Lus10009883 pacid=23180175 polypeptide=Lus10009883 locus=Lus10009883.g ID=Lus10009883.BGIv1.0 annot-version=v1.0 MEENRNIGRLARMNSLGMSDVVIGCVMPYIDDPRDRDAVSLVCRSWYELDALTRKHVTIALCYTTSPNRLRRRFNHLESLKLKGKPRAAMFNLIPEDWGG FVSPWVNEIVESFNCLKSVHFRRMIVTDSDMDLLATSRGKALHHLKLDKCSGFSTDGLLQVARLCRQLRTLVLEESIILEKDGDWLHELATHNSVLETLN FYMIDLAKLKVEDFDLIAKNCKSLISVKINDCEILDLIDFFRVASSLEEFCGGSFPDLPEDDVPDRLDLLYALLDTEDDCLLIQRYTNLEIFENLNDFRL VLLDREEKIEDLPLDNGVGALLSGCVKLRRFALYLRQGGLIDLGMSYIGQYSQNIRRMLLGYVGNNDEGLRALSRGCPNLQKLEMRGCCFSESALARAML HLTSLRYLWVQGCRPSQLGRDLLAMARPFWNIELIPPRKVLVPNEGGEIVVEHPAQILASKNRFSRYCNPLGPTKLLRSDIPDIFNRPIQHKGRMWGRAA FSSWYLVN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10009883 [exp]	0	1
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10040183 [exp]	2.0	0.9318
AT3G12100			Cation efflux family protein (...		Lus10021058 [exp]	2.2	0.9097
AT1G77210		AtSTP14	sugar transport protein 14, su...		Lus10009714 [exp]	3.0	0.9147
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10001239 [exp]	3.7	0.9153
AT1G73170			P-loop containing nucleoside t...		Lus10012291 [exp]	6.5	0.8733
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10023989 [exp]	8.9	0.9144
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10015816 [exp]	13.2	0.8966
AT4G17770		ATTPS5	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10019982 [exp]	16.9	0.8744
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003395 [exp]	19.9	0.8856
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10022458 [exp]	21.0	0.8817

Compare expression of checked genes

Lus10009883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.