Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39960 248 / 6e-84 Microsomal signal peptidase 25 kDa subunit (SPC25) (.1) AT4G04200 212 / 1e-69 Microsomal signal peptidase 25 kDa subunit (SPC25) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014838 [exp] 399 / 2e-142 AT2G39960 273 / 8e-94 Microsomal signal peptidase 25 kDa subunit (SPC25) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G064700 [exp] 237 / 1e-79 AT2G39960 312 / 5e-110 Microsomal signal peptidase 25 kDa subunit (SPC25) (.1) Potri.010G192700 [exp] 234 / 2e-78 AT2G39960 321 / 1e-113 Microsomal signal peptidase 25 kDa subunit (SPC25) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06703 [flax] [poplar] SPC25 Microsomal signal peptidase 25 kDa subunit (SPC25)
Representative CDS sequence Show only first row Show all	>Lus10009885 pacid=23180190 polypeptide=Lus10009885 locus=Lus10009885.g ID=Lus10009885.BGIv1.0 annot-version=v1.0 ATGGAAACCAAGTCAGAGCCGACGCCCAACAAGAACCAGAAGAAGGCCAATCTTCTGGATCACCACTCCATCAAGCACATTCTTGACGAGTCCGTCTCCC AAATCGTTACGAGTCGAGGATACGCTGAAGATGTGAGGATGAGCAATGTCAGGCTGTTTCTGGGAACGGTTATTATCGCCGTCGCTCTTGTTGCTCAGTT TTACAAGAAGAAGTTCCCCGAGAACAGAGACTTTTTGATCGGTTGCATCTGGGTGAATATGTGTTTGATGTACGAGTCCTGTGTTTCTAGCGATGGTGGA AAATCTGAAGCCTGTTTGATCCTTGACTATGGCAAGTATGTATTCCTCAATGTAGTGCTGCAGCTTATCATATTCGTGAAGGAAAAGGACGCCATCTTGT TCACTTACCCTCCTAAGGGATCTTACACAAGCACTGGGTTGATGATCTCTTCCAAATTACCAAGATTTGCAGATGACTACACACTCACAATAGCAAGTGC AGATCCAAAATCCATTTCCGCAGGGAAGACTGTGCACCTGACCAGAAGTGTTTCGAAATGGCATGCGACTCTTGCTCCCTTTGCTCCTTATAGCTTACGA TCATTGGAGAAACACAAATATCTGAATGTAGTTGTGACCTGTAATTTGCAGGTTCGCCAAAGATGGAGTATTAGTAGAGGGACTCTTCTGGAAGGATGTT AA
AA sequence Show only first row Show all	>Lus10009885 pacid=23180190 polypeptide=Lus10009885 locus=Lus10009885.g ID=Lus10009885.BGIv1.0 annot-version=v1.0 METKSEPTPNKNQKKANLLDHHSIKHILDESVSQIVTSRGYAEDVRMSNVRLFLGTVIIAVALVAQFYKKKFPENRDFLIGCIWVNMCLMYESCVSSDGG KSEACLILDYGKYVFLNVVLQLIIFVKEKDAILFTYPPKGSYTSTGLMISSKLPRFADDYTLTIASADPKSISAGKTVHLTRSVSKWHATLAPFAPYSLR SLEKHKYLNVVVTCNLQVRQRWSISRGTLLEGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39960			Microsomal signal peptidase 25...		Lus10009885 [exp]	0	1
AT2G39960			Microsomal signal peptidase 25...		Lus10014838 [exp]	2.2	0.7992
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10026925 [exp]	3.7	0.7211
AT5G59613			unknown protein		Lus10040848 [exp]	4.2	0.7235
AT5G32440			Ubiquitin system component Cue...		Lus10027699 [exp]	4.9	0.7131
AT4G21570			Protein of unknown function (D...		Lus10011236 [exp]	5.5	0.6828
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Lus10041218 [exp]	7.9	0.7531
AT1G47820			unknown protein		Lus10035088 [exp]	10.5	0.7500
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10023164 [exp]	13.4	0.7099
AT5G49540			Rab5-interacting family protei...		Lus10016182 [exp]	14.8	0.6907
AT5G52880			F-box family protein (.1)		Lus10027547 [exp]	15.0	0.7298

Compare expression of checked genes

Lus10009885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.