Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39970 440 / 5e-156 PXN, PMP38, APEM3 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) AT5G66380 129 / 7e-35 ATFOLT1 folate transporter 1 (.1) AT2G47490 103 / 3e-25 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) AT1G25380 103 / 6e-25 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT3G05290 94 / 9e-22 AtPNC1, PNC1 peroxisomal adenine nucleotide carrier 1 (.1) AT5G27520 92 / 8e-21 AtPNC2, PNC2 peroxisomal adenine nucleotide carrier 2 (.1) AT4G01100 71 / 2e-13 ADNT1 adenine nucleotide transporter 1 (.1.2) AT1G14560 69 / 5e-13 Mitochondrial substrate carrier family protein (.1) AT4G32400 69 / 7e-13 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT4G26180 66 / 5e-12 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014839 [exp] 558 / 0 AT2G39970 481 / 5e-172 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10034104 [exp] 103 / 4e-25 AT1G25380 414 / 3e-145 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10028339 [exp] 96 / 7e-23 AT5G66380 384 / 2e-135 folate transporter 1 (.1) Lus10001463 [exp] 94 / 1e-21 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Lus10034055 [exp] 91 / 1e-20 AT3G05290 427 / 3e-151 peroxisomal adenine nucleotide carrier 1 (.1) Lus10003041 [exp] 87 / 5e-20 AT1G25380 299 / 6e-102 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10031510 [exp] 89 / 6e-20 AT3G05290 474 / 8e-170 peroxisomal adenine nucleotide carrier 1 (.1) Lus10015188 [exp] 88 / 1e-19 AT3G05290 480 / 4e-172 peroxisomal adenine nucleotide carrier 1 (.1) Lus10010517 [exp] 85 / 3e-18 AT3G05290 437 / 2e-155 peroxisomal adenine nucleotide carrier 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G192600 [exp] 433 / 6e-153 AT2G39970 460 / 7e-164 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.008G064800 [exp] 396 / 1e-138 AT2G39970 393 / 2e-137 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.002G000200 [exp] 369 / 2e-127 AT2G39970 389 / 3e-135 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.007G019000 [exp] 125 / 2e-33 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.010G121500 [exp] 115 / 2e-29 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.008G123700 [exp] 114 / 7e-29 AT1G25380 417 / 8e-146 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.002G200900 [exp] 109 / 2e-27 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.014G125600 [exp] 100 / 4e-24 AT2G47490 448 / 1e-159 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.010G092100 [exp] 95 / 5e-22 AT5G27520 449 / 6e-160 peroxisomal adenine nucleotide carrier 2 (.1) Potri.013G023200 [exp] 90 / 3e-20 AT3G05290 449 / 5e-160 peroxisomal adenine nucleotide carrier 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10009886 pacid=23180155 polypeptide=Lus10009886 locus=Lus10009886.g ID=Lus10009886.BGIv1.0 annot-version=v1.0 ATGTCAGACGCTTTGATCAATGGTCTTGCCGGAGCTGGCGGTGGAATCATCGCTCAGCTCCTCACTTATCCTCTTCAAACTGTGAACACTCGGCAGCAAA CGGAGCGTGGCGTTCCTAAGGAACAGAAACAGACGCTTGGTACCGTACATCAAATGTTGCAGGTTGTGAGGCATGAAGGATGGGGCCGGTTGTACGGAGG ATTAGCTCCGTCACTAGTAGGAACTGCTGCTTCTCAGGGAGTTTATTATTATTTCTATCAAATATTTAGGGACAAAGCTCAAGCCATGGCACTTGCACGT AAAAAGAAAGGGTTTGGTGATGGATCGATTGGGATGTTTTCATCACTTGTTGTGGCTGCTTTAGCTGGGTCTGTAAATGTGTTGATGACAAATCCTATCT GGGTGATTGTTACTCGAATGCAGACTCATAAAAAGGCTGCAAAGAAATCAGAACCTAGTAGCTCATCATCAGATGCTTCTGATAAGCTTATAGCTGCAAC GGAACCACCTCCATTTGGGACGTCTGATGCGATTCAAGAAGTCTTTGGTGAGGCTGGAATTCTAGGTTTCTGGAGAGGTGTATTGCCCACACTGATCATG GTAAGTAATCCCGCAATGCAATTCATGTTATATGAAACCCTTCTTAAGAAGTTGAAACAACGACGGGCATTGCTTAGGAAAGATGTAAATGACATCACTG CTTTGGAGATATTCCTTCTCGGAGCATTGGCGAAACTTGGGGCTACTGTTGTAACATATCCGCTTCTTGTTGTCAAGTCGCGGCTTCAAGCTAAGCAAGT AACTACAGGAGATAAAAGGCATCACTATAAAGGTACGTCGGATGCTATACTGAAGATGATCCGATACGAAGGTTTCCATGGGTTTTACAAAGGTATGAGC ACGAAGATCTGTCAAAGTGTTCTTGCGGCTGCTGTGTTGTTCATGGTGAAGGAAGAACTGGTGAAGGGTGCTCGCCTCTTACTGACTGGTAGTAAAGCGG TGAAATCAAAGCCTCCCTAA
AA sequence Show only first row Show all	>Lus10009886 pacid=23180155 polypeptide=Lus10009886 locus=Lus10009886.g ID=Lus10009886.BGIv1.0 annot-version=v1.0 MSDALINGLAGAGGGIIAQLLTYPLQTVNTRQQTERGVPKEQKQTLGTVHQMLQVVRHEGWGRLYGGLAPSLVGTAASQGVYYYFYQIFRDKAQAMALAR KKKGFGDGSIGMFSSLVVAALAGSVNVLMTNPIWVIVTRMQTHKKAAKKSEPSSSSSDASDKLIAATEPPPFGTSDAIQEVFGEAGILGFWRGVLPTLIM VSNPAMQFMLYETLLKKLKQRRALLRKDVNDITALEIFLLGALAKLGATVVTYPLLVVKSRLQAKQVTTGDKRHHYKGTSDAILKMIRYEGFHGFYKGMS TKICQSVLAAAVLFMVKEELVKGARLLLTGSKAVKSKPP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Lus10009886 [exp]	0	1
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Lus10014839 [exp]	1.0	0.9152
AT3G07530			unknown protein		Lus10040483 [exp]	4.5	0.8745
AT5G62960			unknown protein		Lus10032130 [exp]	9.2	0.8413
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10036464 [exp]	13.7	0.8680
AT1G08390			unknown protein		Lus10042503 [exp]	14.2	0.7927
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10018596 [exp]	15.4	0.8657
AT4G32340			Tetratricopeptide repeat (TPR)...		Lus10002013 [exp]	16.9	0.7790
					Lus10031302 [exp]	20.7	0.8384
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017601 [exp]	32.1	0.8596
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	34.4	0.8651

Compare expression of checked genes

Lus10009886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.