Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11250 492 / 2e-176 Ribosomal protein L10 family protein (.1) AT3G09200 491 / 5e-176 Ribosomal protein L10 family protein (.1.2) AT2G40010 484 / 2e-173 Ribosomal protein L10 family protein (.1) AT1G25260 61 / 1e-10 Ribosomal protein L10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014841 [exp] 537 / 0 AT3G11250 489 / 6e-176 Ribosomal protein L10 family protein (.1) Lus10040214 [exp] 493 / 6e-177 AT2G40010 484 / 6e-174 Ribosomal protein L10 family protein (.1) Lus10028276 [exp] 489 / 5e-175 AT2G40010 486 / 1e-174 Ribosomal protein L10 family protein (.1) Lus10009447 [exp] 438 / 1e-155 AT3G09200 431 / 1e-153 Ribosomal protein L10 family protein (.1.2) Lus10001549 [exp] 279 / 3e-91 AT2G40010 298 / 6e-99 Ribosomal protein L10 family protein (.1) Lus10043280 [exp] 56 / 1e-08 AT1G25260 351 / 3e-124 Ribosomal protein L10 family protein (.1) Lus10019424 [exp] 56 / 3e-08 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1) Lus10030073 [exp] 48 / 4e-06 AT1G25260 343 / 5e-121 Ribosomal protein L10 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G066300 [exp] 489 / 4e-175 AT2G40010 510 / 0.0 Ribosomal protein L10 family protein (.1) Potri.010G191200 [exp] 487 / 2e-174 AT3G09200 505 / 0.0 Ribosomal protein L10 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00466 [flax] [poplar] Ribosomal_L10 Ribosomal protein L10
Representative CDS sequence Show only first row Show all	>Lus10009887 pacid=23180185 polypeptide=Lus10009887 locus=Lus10009887.g ID=Lus10009887.BGIv1.0 annot-version=v1.0 ATGGGCAAACTATCCAAGGCCGAGAAGAAGCTCGCTTATGACTCCAAGATGTGTCAGCTCCTCGACGATTTCAGCCAGGTCCTGATTGTTGCTGCTGACA ACGTCGGATCCACCCAGCTTCAGAACATCAGGAGGGGTTTGAGAGGTGATTCGGTTGTGCTCATGGGCAAGAACACTATGATGAAGAGGACTATTAGGGT TCACTCTGAGAAGTCTGGCAACACTGCTATCCTCAACCTCCTTCCTCTGCTTCAGGGGAACGTTGGTTTGATCTTCACCAAAGGAGATCTCAAGGAAGTG AGCGAGGAAGTTGCCAAGTACAAGGTTGGAGCCCCTGCTCGTGTTGGTCTGGTTGCTCCAATTGATGTGGTGGTGCCTCCTGGTAACACTGGACTCGACC CATCTCAGACATCTTTCTTCCAGGTGCTTAACATTCCCACCAAGATTAACAAGGGTACTGTTGAAATCATTACCCCTGTGGAGCTGATTAAGAAGGGTGA CAAGGTGGGGTCTTCTGAGGCTGCCCTCCTTGCCAAGCTTGGCATCAGGCCTTTCTCCTATGGGCTTGTGGTGGACTCTGTTTACGATGATGGTTCAGTC TTCAGTCCTGAGGTGCTTGATCTGACAGAGGATGACCTCATGGGGAAATTCGCTGCTGGTGTGTCCATGGTTACTGCCCTTTCACTGGCGATCTCATACC CTACTCTTGCTGCTGCTTCCCACATGTTCATCGGTGCATACAAGAATGCTTTGGCTATTGCTGTTGAAACCGATTATTCCTACCCTCAGGCTGAGCAAGT GAAGGAGTACCTGAAGGGCGGTATTATCTTTGCTAGAAGCTCTGAGGCGGTTACTTTTCCTCTCTCCGGCGCTGGTTTTCCGATCATTTCCGGCTACCTT CATCTCCCTTCACCACAGTTTCACTGCGCTGATTTTACAGCACTCTGCCTTCTAGCCCGGGAATCCTCGCTGCCACGAGTCTTCTTCTTTCCTCCGGTGC TGATACACTCGACGGGTTCCATACCGACCGAGTCTTTTGCCTAG
AA sequence Show only first row Show all	>Lus10009887 pacid=23180185 polypeptide=Lus10009887 locus=Lus10009887.g ID=Lus10009887.BGIv1.0 annot-version=v1.0 MGKLSKAEKKLAYDSKMCQLLDDFSQVLIVAADNVGSTQLQNIRRGLRGDSVVLMGKNTMMKRTIRVHSEKSGNTAILNLLPLLQGNVGLIFTKGDLKEV SEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVDSVYDDGSV FSPEVLDLTEDDLMGKFAAGVSMVTALSLAISYPTLAAASHMFIGAYKNALAIAVETDYSYPQAEQVKEYLKGGIIFARSSEAVTFPLSGAGFPIISGYL HLPSPQFHCADFTALCLLARESSLPRVFFFPPVLIHSTGSIPTESFA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11250			Ribosomal protein L10 family p...		Lus10009887 [exp]	0	1
AT3G11250			Ribosomal protein L10 family p...		Lus10014841 [exp]	1.0	0.9679
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014014 [exp]	1.4	0.9584
AT1G07940			GTP binding Elongation factor ...		Lus10023174 [exp]	2.4	0.9439
AT4G36130			Ribosomal protein L2 family (....		Lus10028468 [exp]	3.0	0.9558
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10020429 [exp]	3.5	0.9183
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10029824 [exp]	3.9	0.9443
AT3G57490			Ribosomal protein S5 family pr...		Lus10014909 [exp]	4.0	0.9551
AT1G73240			unknown protein		Lus10026210 [exp]	4.6	0.9058
AT4G20020			unknown protein		Lus10036589 [exp]	4.7	0.9226
AT1G07930			GTP binding Elongation factor ...		Lus10015070 [exp]	5.5	0.9238

Compare expression of checked genes

Lus10009887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.