Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05730 726 / 0 JDL1, WEI2, TRP5, AMT1, ASA1 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) AT2G29690 681 / 0 ATHANSYNAB, ASA2 anthranilate synthase 2 (.1) AT3G55870 608 / 0 ADC synthase superfamily protein (.1) AT2G28880 150 / 4e-38 ADCS, EMB1997 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) AT1G18870 57 / 2e-08 ATICS2, ICS2 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014842 [exp] 1015 / 0 AT5G05730 864 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Lus10016945 [exp] 720 / 0 AT2G29690 872 / 0.0 anthranilate synthase 2 (.1) Lus10014830 [exp] 719 / 0 AT2G29690 875 / 0.0 anthranilate synthase 2 (.1) Lus10036525 [exp] 140 / 9e-35 AT2G28880 1026 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10041403 [exp] 137 / 1e-33 AT2G28880 1078 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10023622 [exp] 60 / 3e-09 AT1G74710 623 / 0.0 SALICYLIC ACID INDUCTION DEFICIENT 2, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, ADC synthase superfamily protein (.1.2) Lus10024255 [exp] 43 / 0.0008 AT1G18870 459 / 2e-158 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G190600 [exp] 771 / 0 AT5G05730 835 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Potri.009G044300 [exp] 696 / 0 AT2G29690 808 / 0.0 anthranilate synthase 2 (.1) Potri.008G066600 [exp] 205 / 1e-63 AT3G55870 213 / 3e-68 ADC synthase superfamily protein (.1) Potri.001G250300 [exp] 170 / 2e-49 AT2G29690 187 / 2e-56 anthranilate synthase 2 (.1) Potri.010G221500 [exp] 145 / 2e-36 AT2G28880 1016 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Potri.012G070000 [exp] 51 / 2e-06 AT1G18870 628 / 0.0 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00425 [flax] [poplar] Chorismate_bind chorismate binding enzyme PF04715 [flax] [poplar] Anth_synt_I_N Anthranilate synthase component I, N terminal region
Representative CDS sequence Show only first row Show all	>Lus10009888 pacid=23180196 polypeptide=Lus10009888 locus=Lus10009888.g ID=Lus10009888.BGIv1.0 annot-version=v1.0 ATGCAGAGCCTCGGAGTAGCATCTCATCATCGGTTGTCGCCGTTAAGCAGCGACCGAGGGCTGATTCCTCCGTCGACCTACGGGGAGACATGCATTTCAT CGAGGATGAGGCCGAGGTCGGCGTCTTCGTCTTCCTCCGTCCAACGAATCAAATGCGTTGCAACCATGAGTAGCTGTAGAACTTCGATCGTTGAAGAGCC AGCAAAGTTCATGGAAGCTGCTAAACAGGGGAATTTGGTCCCGCTTCAGTGCCAGATATTTTCGGACCAGCTCACTCCTGTAACTGCTTACAGATGTTTG GTGAAAGAAGATGACCGAGAAGCACCTAGCTTTCTCTTCGAGGCTGTGGAACCAGGTTTCCGGGTTTCAAGCGTTGGGAGGTACAGCGTTATAGGGGCCC AACCTAGCGTTGAAATCGTTGCAAAAGAAAATAGAGTTACCATAATGGACCATGAACGTGGCGAGATTACTAAGGAAATTGCTGAAGATCCGATGACCAT TCCGAGAAGCGTTTCAGAAGGTTGGAAACCACAACTGATGGGTGACCTTCCGGCTGCCTTTTGCTGTGGCTGGGTTGGTTTCTTTTCATATGATACTGTT AGATATGTGGAGAAGAAGAAGCTACCGTTCTCAAATGCTCCCGATGATGATCTGAACCTTCCTGATATACATCTGGCTCTCTATGACTATAGTACTACTT ACAAGTTCACAGACACTAGCTTCCTTCTCGGGTGGAGCCTTGTGCAATTAATATCTTTATCTCAATGGTTTCAGAAAGTGTACGTAATCCACTGGGTCCA TATAGATCGATACTCATCTGTTGAAAGTGCTTATACCGATGGGATAAAACGTTTGGAAACACTCGTGGCCAGAGTGCAAGACATTGACCCTCCGAAGTTG TCAGCCGGGTTTGTAAATGTTCAGACAAGCAAATTTGGCCCCTCGTTGAAGAAGTCGAGCATGACTAGCCAAGAGTACATGAATCCATTTGAGGTCTACC GAGCTTTGAGAATCGTGAATCCCAGTCCTTATATGGCATACTTGCAGGCACGAGGCTGTATCTTAGTTGCCTCCAGCCCAGAAATTCTCACCTGGGTCAA GCAGAACAAGGTGGTGAATCGGCCACTTGCAGGTACCATCAAAAGAGGGAAAACAGCAGAGGAAGATGAAATCCTGGCAAAGCAACTCTTGAGCGACCCT AAGCAATGCGCGGAACACATTATGCTCGTCGACTTAGGAAGAAATGATGTGGGGAAGGTTTCCAAGAGCGGTTCAGTCAAGGTAGAGAAACTCATGGACA TCGAGAGATATTCCCATGTCATGCACATTAGTTCAACGGTCACGGGAGAACTGCAGGAGAACGTTACATGCTGGGACACACTCAGGGCAGCACTTCCAGT AGGAACCGTGAGTGGAGCCCCTAAAGTGAGAGCGATGGAGCTAATAGACAGCCTGGAGGTGAAGAAGCGAGGCCCCTACAGCGGAGGGTTCGGAGGAATT TCATTCATGGGAGACATGGACGTGGCACTGGCTCTGAGGACTATGGTGTTCCCCACCGGGACAAGGTACGACACCATGTACTCCTACGGGGACGCAGCAC AGCGTCGCGAGTGGGTGGCATACCTACAGGCCGGTGCAGGGATTGTAGCGGACAGTGTGCCCGAGGACGAGCATCTGGAGTGTCATAACAAGGCTGCTGG CCTAGCTCGGGCTATCGATCTGGCCGAGTCGGCTTTCCTATCTAACACCGAGCCATGA
AA sequence Show only first row Show all	>Lus10009888 pacid=23180196 polypeptide=Lus10009888 locus=Lus10009888.g ID=Lus10009888.BGIv1.0 annot-version=v1.0 MQSLGVASHHRLSPLSSDRGLIPPSTYGETCISSRMRPRSASSSSSVQRIKCVATMSSCRTSIVEEPAKFMEAAKQGNLVPLQCQIFSDQLTPVTAYRCL VKEDDREAPSFLFEAVEPGFRVSSVGRYSVIGAQPSVEIVAKENRVTIMDHERGEITKEIAEDPMTIPRSVSEGWKPQLMGDLPAAFCCGWVGFFSYDTV RYVEKKKLPFSNAPDDDLNLPDIHLALYDYSTTYKFTDTSFLLGWSLVQLISLSQWFQKVYVIHWVHIDRYSSVESAYTDGIKRLETLVARVQDIDPPKL SAGFVNVQTSKFGPSLKKSSMTSQEYMNPFEVYRALRIVNPSPYMAYLQARGCILVASSPEILTWVKQNKVVNRPLAGTIKRGKTAEEDEILAKQLLSDP KQCAEHIMLVDLGRNDVGKVSKSGSVKVEKLMDIERYSHVMHISSTVTGELQENVTCWDTLRAALPVGTVSGAPKVRAMELIDSLEVKKRGPYSGGFGGI SFMGDMDVALALRTMVFPTGTRYDTMYSYGDAAQRREWVAYLQAGAGIVADSVPEDEHLECHNKAAGLARAIDLAESAFLSNTEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Lus10009888 [exp]	0	1
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10030381 [exp]	3.2	0.8639
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10042894 [exp]	7.3	0.8590
					Lus10016109 [exp]	12.4	0.8377
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10027459 [exp]	12.6	0.8455
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10034072 [exp]	14.5	0.8593
AT3G01270			Pectate lyase family protein (...		Lus10037207 [exp]	20.8	0.7759
					Lus10026122 [exp]	21.2	0.8271
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Lus10015868 [exp]	22.2	0.7827
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10015382 [exp]	28.2	0.8223
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10042550 [exp]	29.7	0.8212

Compare expression of checked genes

Lus10009888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.