Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55960 412 / 9e-146 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29780 97 / 1e-23 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29770 88 / 5e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G11860 86 / 6e-19 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT5G45700 80 / 3e-17 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G46410 81 / 8e-17 SSP4 SCP1-like small phosphatase 4 (.1.2) AT1G55900 79 / 1e-16 TIM50, EMB1860 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT4G18140 79 / 2e-16 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT3G17550 47 / 7e-06 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G23470 46 / 1e-05 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014844 [exp] 534 / 0 AT3G55960 441 / 2e-157 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10028284 [exp] 401 / 2e-141 AT3G55960 383 / 2e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10002484 [exp] 325 / 1e-111 AT3G55960 333 / 2e-114 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10004810 [exp] 294 / 9e-99 AT3G55960 295 / 3e-99 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007321 [exp] 98 / 3e-23 AT5G45700 206 / 3e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029273 [exp] 95 / 2e-22 AT5G45700 211 / 4e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10025376 [exp] 90 / 7e-20 AT5G46410 343 / 2e-114 SCP1-like small phosphatase 4 (.1.2) Lus10004596 [exp] 90 / 7e-20 AT5G46410 398 / 3e-135 SCP1-like small phosphatase 4 (.1.2) Lus10004414 [exp] 87 / 4e-19 AT1G55900 411 / 1e-143 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G188500 [exp] 424 / 8e-151 AT3G55960 406 / 8e-144 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G068800 [exp] 411 / 1e-145 AT3G55960 342 / 3e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G100800 [exp] 322 / 4e-110 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.016G116700 [exp] 303 / 7e-103 AT3G55960 248 / 1e-81 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G072000 [exp] 90 / 1e-20 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G353700 [exp] 92 / 2e-20 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.004G062900 [exp] 89 / 4e-20 AT5G45700 194 / 1e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G078300 [exp] 85 / 2e-18 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.001G364500 [exp] 82 / 2e-17 AT1G55900 405 / 3e-141 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.011G093000 [exp] 80 / 8e-17 AT1G55900 415 / 5e-145 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10009890 pacid=23180149 polypeptide=Lus10009890 locus=Lus10009890.g ID=Lus10009890.BGIv1.0 annot-version=v1.0 ATGGCTGAGTTGACTCAGCCCGATGTGGTCTACTCTCCTCGGTCTTTCCAGCTATGGATGACGCTCTGGAACTGGCTGGCTTTCTTCTTCCAGATCTTCC TTCAGATCCTCCGAACTGTTGGACACCTTCCTCTTCTCTCCTCCTCCTCCTCCTCGACGACTTCTCACTCTTTCAAGCCCTTGCCCGACGTCGAATTGCC GGAGATCGATTCTGCTCCTTCTCCTTCCACCTTGGAGATCGCCACCGGTGATCTCGACTCCGGTCGGAAAATTCAGCCCCTCCAAAGACTCACGGTTGTT CTCGACTTGGACGAGACTTTGATTTGTGCATACGAGACCTCCAGTTTGCCGCCGACCCTCAGGAGCCAGGCCACCGACGCCGGATTGAAGTGGTTCGAGT TGGAGTGCGTGTCGTCAGACAAGGAATGTGACGGGAAACCTAAGATCAATTATGTTACGGTGTTTGAGCGTCCAGGGTTGCACGAATTCCTTAAACAGCT CAGTGAATTTGCTGACCTTGTGCTCTTCACTGCTGGCTTGGAAGGTTATGCCAGGCCCCTTGTTGACAGAATAGATACAGAAAAGCTGTTTAGCCTTCGC CTTTATCGGCCATCAACGACTAGCACGGAATACCGTGAGCATGTGAAGGATCTGTCTCGCATATCAAATGATGCCAGCCACATTGTTATTGTGGACAACA ACCCGTTCAGCTTCTTGTTACAACCCTTGAATGGAATCCCATGCGTTTCATTTTCTGCTGGCCAACCACAGGACACACAGCTATTAGATGTAATCCTACC TCTCCTGAAGCACCTATCTCAGCAGATGGACGTGAGGCCAGTGCTGTATGAGAGATTCCACATGCCTGAATGGTTTCAAAAACATGGAATCCCTGCTTCT GTCTGGACATGA
AA sequence Show only first row Show all	>Lus10009890 pacid=23180149 polypeptide=Lus10009890 locus=Lus10009890.g ID=Lus10009890.BGIv1.0 annot-version=v1.0 MAELTQPDVVYSPRSFQLWMTLWNWLAFFFQIFLQILRTVGHLPLLSSSSSSTTSHSFKPLPDVELPEIDSAPSPSTLEIATGDLDSGRKIQPLQRLTVV LDLDETLICAYETSSLPPTLRSQATDAGLKWFELECVSSDKECDGKPKINYVTVFERPGLHEFLKQLSEFADLVLFTAGLEGYARPLVDRIDTEKLFSLR LYRPSTTSTEYREHVKDLSRISNDASHIVIVDNNPFSFLLQPLNGIPCVSFSAGQPQDTQLLDVILPLLKHLSQQMDVRPVLYERFHMPEWFQKHGIPAS VWT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10009890 [exp]	0	1
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10011254 [exp]	7.7	0.8597
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Lus10028135 [exp]	8.1	0.8908
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Lus10009367 [exp]	8.8	0.8671
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10014844 [exp]	9.1	0.8358
AT5G24870			RING/U-box superfamily protein...		Lus10026941 [exp]	10.1	0.9040
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10003119 [exp]	10.2	0.8836
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009026 [exp]	12.6	0.8858
AT1G14780			MAC/Perforin domain-containing...		Lus10041285 [exp]	14.3	0.8627
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10011125 [exp]	14.5	0.8549
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Lus10037141 [exp]	16.2	0.8793

Compare expression of checked genes

Lus10009890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.