Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08510 848 / 0 ATPLC2 phospholipase C 2 (.1.2.3) AT3G55940 810 / 0 Phosphoinositide-specific phospholipase C family protein (.1) AT5G58700 674 / 0 ATPLC4 phosphatidylinositol-speciwc phospholipase C4 (.1.2) AT2G40116 674 / 0 Phosphoinositide-specific phospholipase C family protein (.1) AT5G58690 635 / 0 ATPLC5 phosphatidylinositol-speciwc phospholipase C5 (.1) AT5G58670 606 / 0 ATPLC1 phospholipase C 1, ARABIDOPSIS THALIANA PHOSPHOLIPASE C, phospholipase C1 (.1) AT4G38530 600 / 0 ATPLC1 phospholipase C1 (.1) AT3G47290 381 / 8e-126 ATPLC8 phosphatidylinositol-speciwc phospholipase C8 (.1) AT3G47220 355 / 9e-116 ATPLC9 phosphatidylinositol-speciwc phospholipase C9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014845 [exp] 1155 / 0 AT3G08510 866 / 0.0 phospholipase C 2 (.1.2.3) Lus10028287 [exp] 1025 / 0 AT3G08510 840 / 0.0 phospholipase C 2 (.1.2.3) Lus10040199 [exp] 969 / 0 AT3G08510 786 / 0.0 phospholipase C 2 (.1.2.3) Lus10040664 [exp] 721 / 0 AT5G58700 744 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Lus10009894 [exp] 699 / 0 AT2G40116 824 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Lus10036182 [exp] 662 / 0 AT3G08510 669 / 0.0 phospholipase C 2 (.1.2.3) Lus10038319 [exp] 653 / 0 AT3G08510 659 / 0.0 phospholipase C 2 (.1.2.3) Lus10018241 [exp] 526 / 0 AT5G58700 532 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Lus10018240 [exp] 446 / 1e-151 AT5G58700 473 / 1e-162 phosphatidylinositol-speciwc phospholipase C4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G188800 [exp] 943 / 0 AT3G08510 869 / 0.0 phospholipase C 2 (.1.2.3) Potri.008G068400 [exp] 939 / 0 AT3G08510 888 / 0.0 phospholipase C 2 (.1.2.3) Potri.001G252100 [exp] 762 / 0 AT5G58700 791 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Potri.010G188900 [exp] 743 / 0 AT2G40116 806 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Potri.008G068300 [exp] 735 / 0 AT2G40116 823 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Potri.001G252300 [exp] 734 / 0 AT3G08510 701 / 0.0 phospholipase C 2 (.1.2.3) Potri.009G046600 [exp] 611 / 0 AT3G08510 557 / 0.0 phospholipase C 2 (.1.2.3) Potri.001G252104 [exp] 96 / 7e-24 AT3G08510 82 / 1e-19 phospholipase C 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0384 [flax] [poplar] PLC PF00387 [flax] [poplar] PI-PLC-Y Phosphatidylinositol-specific phospholipase C, Y domain CL0384 [flax] [poplar] PLC PF00388 [flax] [poplar] PI-PLC-X Phosphatidylinositol-specific phospholipase C, X domain CL0220 [flax] [poplar] EF_hand PF09279 [flax] [poplar] EF-hand_like Phosphoinositide-specific phospholipase C, efhand-like
Representative CDS sequence Show only first row Show all	>Lus10009891 pacid=23180188 polypeptide=Lus10009891 locus=Lus10009891.g ID=Lus10009891.BGIv1.0 annot-version=v1.0 ATGTCCAGGCAGACTTACAGAGTATGCTTCTGCTTCCGCCGCAGGTTCAAGCTCGCTGTTGCCGAGGCGCCCGACGAGATTAAGACCCTCTTCAATAGCT ACTCCGACAACGGCCTCATGTCCGCCGATCACCTCCGTCGTTTCCTCGTCGAGGTCCAGAAGCAGGAGAATGTCACTCTCGAAGAAGCTCAAGCTGCCAT CGACCGTATTCAAGATACTAAGCATTTGAACATTCTGCACCACCACAGACCCCAGACTCTTAACCTCGAGGCCTTCTTCAAGTACCTCCTTGGGGACACT AACCTTCCCTTTGACCTCAAACGTGGGGTGCATCATGATATGACGGCGCCTCTTTCGCATTATTTCATATACACGGGCCACAACTCTTATCTAACAGGAA ACCAACTTAGTAGTGACTGCAGTGATGTCCCTATCATACAAGCTCTGCAGAGAGGTGTGAGGGTGATTGAGTTGGATATATGGCCTAACTCCAACAAAGA TGACATTGAAGTTCTCCATGGAAGGACACTGACTACACCGGTGGAACTTATCAGATGTTTAAGGTCTATCAAGGAGCACGCCTTTACAGCATCTGATTAT CCTCTAGTTATAACTCTAGAAGACCACCTTACTCCAGATCTGCAAGCTAAAGTTGCTGAGATGGTCACGCAAACATTTGGTGACATCTTGTTTACTCCCG GCTCGGAATGCTTGAAAGAGTTCCCCTCACCAGAGTCGTTGAAGAGGCGAATTATTATATCAACCAAACCACCAAAAGAGTACCTGACAGCTAAGGATGC CCAGGAGGGTGATTCGCAAAATGGGAAAACTGCAACTGATGAAGAAGCATGGGGGAAAGAAGTGCCTCATCTTAAAGGCGCCCCTTCAGTTCATGACAAG GATGAATACGAGGAAGATGAAGATGATGAAGAATTTCCAGATTGTGGATCGACCAAGTCACAGAAATCCCTTGAGCCAGAGTATAAACGTTTAATTGCTA TCCATGCTGGAAAACCCAAAGGGGGCATCACTCAATGCCTCAAAGTAGATCCTGATAAAGTGAGACGTCTAAGCTTAAGTGAGCCACAGCTGGAAAAGGC TGCAGAGACCTATGGTACTGATATTGTCAGTCGGAAGTTGATTCCCAACGAACTCTCTTTTATCAGGTTTACGCAACGGAACATATTGAGAGTGTATCCG AAGGGCACCCGTATTAATTCATCCAACTACAACCCCCTAATTGGTTGGATGCATGGAGCTCAAATGGTTGCCTTTAACATGCAGGGATTCGGAAGATCTC TTTGGTTGATGCATGGAATGTTCAGGTCCAACGGAGGGTGTGGGTATGTGAAGAAACCAGGTTTTCTACTCAAGTCAGGTCCAAACAATGAAGTATTCGA TCCCAGAGTCAAGTTGCCAGTGAAGAAAACTCTTAAGGTAAGAGTATACATGGGAGAAGGATGGTATTATGATTTCCGCCACACGCACTTTGATCAGTAT TCCCCACCAGATTTCTACACTAGGGTGGGGATTGCTGGAGTGCCTGCAGATGTTGTGATGAGGAAAACAAGGACATTGGAAGACAACTGGATACCAGTTT GGAATGAAGAGTTTGAGTTCCGATTGACAGTTCCAGAATTAGCCTTGCTTCGGCTGGAAGTGCACGAATACGATATGTCAGAAAAGGATGATTTCGGAGG ACAGACTTGCCTGCCTGTATCGGAAATAAGAAGAGGGATTCGAGCAGTTCCGCTACATGACAGGGAGGGAAAGAAATACAACAATGTAAAGCTGTTGGTG CACTTCGATTTCGTGTGA
AA sequence Show only first row Show all	>Lus10009891 pacid=23180188 polypeptide=Lus10009891 locus=Lus10009891.g ID=Lus10009891.BGIv1.0 annot-version=v1.0 MSRQTYRVCFCFRRRFKLAVAEAPDEIKTLFNSYSDNGLMSADHLRRFLVEVQKQENVTLEEAQAAIDRIQDTKHLNILHHHRPQTLNLEAFFKYLLGDT NLPFDLKRGVHHDMTAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIQALQRGVRVIELDIWPNSNKDDIEVLHGRTLTTPVELIRCLRSIKEHAFTASDY PLVITLEDHLTPDLQAKVAEMVTQTFGDILFTPGSECLKEFPSPESLKRRIIISTKPPKEYLTAKDAQEGDSQNGKTATDEEAWGKEVPHLKGAPSVHDK DEYEEDEDDEEFPDCGSTKSQKSLEPEYKRLIAIHAGKPKGGITQCLKVDPDKVRRLSLSEPQLEKAAETYGTDIVSRKLIPNELSFIRFTQRNILRVYP KGTRINSSNYNPLIGWMHGAQMVAFNMQGFGRSLWLMHGMFRSNGGCGYVKKPGFLLKSGPNNEVFDPRVKLPVKKTLKVRVYMGEGWYYDFRHTHFDQY SPPDFYTRVGIAGVPADVVMRKTRTLEDNWIPVWNEEFEFRLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVSEIRRGIRAVPLHDREGKKYNNVKLLV HFDFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10009891 [exp]	0	1
AT4G32600			RING/U-box superfamily protein...		Lus10017750 [exp]	1.0	0.8855
AT5G53340			Galactosyltransferase family p...		Lus10038830 [exp]	2.4	0.8071
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10002454 [exp]	3.5	0.8372
AT3G59350			Protein kinase superfamily pro...		Lus10025498 [exp]	6.5	0.8179
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10016736 [exp]	6.6	0.7828
AT1G15060			Uncharacterised conserved prot...		Lus10043481 [exp]	7.9	0.7913
AT4G01290			unknown protein		Lus10036389 [exp]	8.4	0.7848
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10034131 [exp]	8.5	0.7675
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10008288 [exp]	8.7	0.8098
AT5G55600			agenet domain-containing prote...		Lus10016606 [exp]	9.2	0.8147

Compare expression of checked genes

Lus10009891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.