Plant FIBer expression Database

Lus10009892 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023759
[exp]
122 / 6e-35 ND /
Lus10021579
[exp]
121 / 1e-34 ND /
Lus10025371
[exp]
117 / 1e-31 ND /
Lus10032702
[exp]
116 / 2e-31 AT5G56730 135 / 7e-36 Insulinase (Peptidase family M16) protein (.1)
Lus10040596
[exp]
111 / 3e-30 ND /
Lus10002100
[exp]
112 / 2e-29 ND /
Lus10033166
[exp]
108 / 2e-28 AT5G39600 207 / 1e-67 unknown protein
Lus10030058
[exp]
91 / 2e-23 ND /
Lus10033216
[exp]
95 / 1e-22 AT1G48120 41 / 0.002 hydrolases;protein serine/threonine phosphatases (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10009892 pacid=23180171 polypeptide=Lus10009892 locus=Lus10009892.g ID=Lus10009892.BGIv1.0 annot-version=v1.0
ATGAAGAAGATTCCTGGAGATTGGACGCCGGAGTTGGGGGAGGCCATGGCCGCGGGAGGTGAGGAACTGATAAGAAGGCTTGCATGGAGGAATAGTCTGA
AATGGGTATTCGAAGACTTAGGAGCGATGTCGACGGGAGATGATGACTTGCGGCGTTTTTTTGGGCGGTTTATTGGTCGTCCTATTTCTGCATCAAATAG
GAACTTGTTAGAGCAGAAATTGAAGGGAAAGAAATCTAGACTAGGGGATGATGGGCAGCCTAGTTCTCAATTTCAAATTCTTAGTCCGATATACTGGGAT
CCTGATCTGCAGTCTGCTGAGAGGGAGTTTATCATGGAGGAGATTTTTGCTAGCCAGGCTCCAGATTTTGCTGATGACATCCACACCATTCAGGATGACG
CTGACGGCGACGATGAGCAGATCCCGTCAGACGGTGATGGTGATGATGATGAGGATTGTGATGCCTCGTTTAGCCTTTTCTTGTTGGACATTGCACGCTC
GCGGAAGAGAGCACCAGGGAGAGGTGCAGCCGCTCCATCTGGCTTTGGAGCGGGTACTAGATCCTCCCGTGTGTCACAAGGGTCGTCTACTATGGGGCCT
AGGCGGGGCAGAGGAGGGCGTTATGCAGGGGTCCACTCGAGCAACACCGGTGGGGAGTAG
AA sequence
>Lus10009892 pacid=23180171 polypeptide=Lus10009892 locus=Lus10009892.g ID=Lus10009892.BGIv1.0 annot-version=v1.0
MKKIPGDWTPELGEAMAAGGEELIRRLAWRNSLKWVFEDLGAMSTGDDDLRRFFGRFIGRPISASNRNLLEQKLKGKKSRLGDDGQPSSQFQILSPIYWD
PDLQSAEREFIMEEIFASQAPDFADDIHTIQDDADGDDEQIPSDGDGDDDEDCDASFSLFLLDIARSRKRAPGRGAAAPSGFGAGTRSSRVSQGSSTMGP
RRGRGGRYAGVHSSNTGGE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10009892
[exp]
0 1
AT2G23945 Eukaryotic aspartyl protease f... Lus10031113
[exp]
1.0 0.9981
AT4G39830 Cupredoxin superfamily protein... Lus10009603
[exp]
2.0 0.9968
AT1G13680 PLC-like phosphodiesterases su... Lus10000649
[exp]
2.2 0.9865
AT3G08990 Yippee family putative zinc-bi... Lus10004823
[exp]
3.9 0.9939
Lus10019151
[exp]
4.0 0.9901
AT5G44390 FAD-binding Berberine family p... Lus10042382
[exp]
4.5 0.9717
AT1G60170 EMB1220 embryo defective 1220, pre-mRN... Lus10002831
[exp]
5.5 0.9847
AT3G24503 ALDH1A, REF1, A... REDUCED EPIDERMAL FLUORESCENCE... Lus10024260
[exp]
6.3 0.9801
AT3G44970 Cytochrome P450 superfamily pr... Lus10013060
[exp]
6.5 0.9831
AT5G39160 RmlC-like cupins superfamily p... Lus10034254
[exp]
6.7 0.9801

Lus10009892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.