Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40116 820 / 0 Phosphoinositide-specific phospholipase C family protein (.1) AT5G58700 704 / 0 ATPLC4 phosphatidylinositol-speciwc phospholipase C4 (.1.2) AT5G58690 657 / 0 ATPLC5 phosphatidylinositol-speciwc phospholipase C5 (.1) AT3G08510 655 / 0 ATPLC2 phospholipase C 2 (.1.2.3) AT3G55940 617 / 0 Phosphoinositide-specific phospholipase C family protein (.1) AT5G58670 545 / 0 ATPLC1 phospholipase C 1, ARABIDOPSIS THALIANA PHOSPHOLIPASE C, phospholipase C1 (.1) AT4G38530 523 / 0 ATPLC1 phospholipase C1 (.1) AT3G47290 409 / 9e-137 ATPLC8 phosphatidylinositol-speciwc phospholipase C8 (.1) AT3G47220 370 / 1e-121 ATPLC9 phosphatidylinositol-speciwc phospholipase C9 (.1) AT5G37740 42 / 0.0002 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040664 [exp] 734 / 0 AT5G58700 744 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Lus10028287 [exp] 707 / 0 AT3G08510 840 / 0.0 phospholipase C 2 (.1.2.3) Lus10014845 [exp] 706 / 0 AT3G08510 866 / 0.0 phospholipase C 2 (.1.2.3) Lus10009891 [exp] 698 / 0 AT3G08510 849 / 0.0 phospholipase C 2 (.1.2.3) Lus10040199 [exp] 682 / 0 AT3G08510 786 / 0.0 phospholipase C 2 (.1.2.3) Lus10036182 [exp] 598 / 0 AT3G08510 669 / 0.0 phospholipase C 2 (.1.2.3) Lus10038319 [exp] 594 / 0 AT3G08510 659 / 0.0 phospholipase C 2 (.1.2.3) Lus10018241 [exp] 501 / 1e-173 AT5G58700 532 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Lus10018240 [exp] 462 / 5e-158 AT5G58700 473 / 1e-162 phosphatidylinositol-speciwc phospholipase C4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G188900 [exp] 946 / 0 AT2G40116 806 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Potri.008G068300 [exp] 929 / 0 AT2G40116 823 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Potri.001G252100 [exp] 774 / 0 AT5G58700 791 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Potri.010G188800 [exp] 700 / 0 AT3G08510 869 / 0.0 phospholipase C 2 (.1.2.3) Potri.008G068400 [exp] 698 / 0 AT3G08510 888 / 0.0 phospholipase C 2 (.1.2.3) Potri.001G252300 [exp] 673 / 0 AT3G08510 701 / 0.0 phospholipase C 2 (.1.2.3) Potri.009G046600 [exp] 569 / 0 AT3G08510 557 / 0.0 phospholipase C 2 (.1.2.3) Potri.001G252104 [exp] 82 / 4e-19 AT3G08510 82 / 1e-19 phospholipase C 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0384 [flax] [poplar] PLC PF00387 [flax] [poplar] PI-PLC-Y Phosphatidylinositol-specific phospholipase C, Y domain CL0384 [flax] [poplar] PLC PF00388 [flax] [poplar] PI-PLC-X Phosphatidylinositol-specific phospholipase C, X domain CL0220 [flax] [poplar] EF_hand PF09279 [flax] [poplar] EF-hand_like Phosphoinositide-specific phospholipase C, efhand-like
Representative CDS sequence Show only first row Show all	>Lus10009894 pacid=23180125 polypeptide=Lus10009894 locus=Lus10009894.g ID=Lus10009894.BGIv1.0 annot-version=v1.0 ATGGGGAAGGACAAAAGGGCAGAATCTGAGCCCGAAGAGAACAATCATAACCTGAGTAAGGGAAGCTACAACTATCGCATGTTCAGTCTCTTCAACCGCA AATTCAAGATCACGGAGGCCGAGCCGCCCAACGACGTCATGCATCTCTTCCGCCAGTACGCCGAGGGCCACCACGAGATGAGCGCTGATCACCTCCGTAA CTTCCTGATTGAGTACCAGAACGAGGCGGATTGTTCCCTCCAGGACGCCGAGAGGATCGTCGCTGAGGTGCTTCAACGGCGCCACCATTTGACTAGGTAC GCCAGGAATGGCCTCAATCTCGACGATTTCTTCCACTTCTTGCTCTCCGGCGATCTCAATGGCCCCATCAACACACAGGTGCACCATGACATGTGTGCTC CATTGTCACATTATTTCATATATACAGGACATAATTCCTACCTCACTGGGAATCAACTCAGCAGTGACTGCAGCGAGGTCCCTATTATAAGGGCTCTACA AAGAGGGGTCAGAGTGATTGAGCTAGATTTATGGCCTAATTCTGCTAAGGACGACGTTCTCGTTCTTCATGGAAGGACATTAACCACGCCTGTGTCGCTG TATAAATGCTTGGAGTCAATAAAAGATTATGCGTTTGTTCGTTCTCCTTATCCGGTCATTATAACTTTGGAAGATCATCTCACACCAGAACTTCAGGAAA AAGTTGCAGAGATGGTCATTCAAATATTTGGAGATATGCTGTATTATCCAGAGTCGGATAGCTTAGTTCTGTTACCTTCGCCAGAACTACTTAAATATCG GATCATGATCTCCACCAAACCACCAAAAGAGTATCTTGAATCCAGTGGCATCAAGCACAAGGGAACATCACCACGAAATGAATCAGAAGATGATTATGAC GATGAAGATGACGGGATAGGGACTTCTGAGACAGAAACTTGCGAGAGAAACAACAGTTATCAGGAAGATGATGATCTGAGCGAGAACCATGATAGATCAG GACAGCTGAGTTCACCAGGATACAAACGACTCATAACCATTCATGCCGGAAAACCCCAGGGTGCCCTAAAACACGCATTGCAGCCTATTGGTGAAAAAGT TAAACGCCTTAGTTTGAGTGAGCATGAAATTGAGAAGGCTGCCAGTACAAATGGAACTGATGTAGTCAGATTTACGCAGAAGAATATTCTGAGAGTTTAT CCAAAGGGAACGCGCATCACCTCCTCCAATTACAAGCCTATTGTTGGTTGGATGCATGGGGCACAAATGATCGCGTTCAACATGCAGGGATATGGAAAAT CATTGTGGTTGATGCATGGGATGTTTAAAGCTAACGGAGGATGTGGTTACGTGAAAAAGCCTGACATTTTGATGAAGAGAGGGGCGAATAATGAGGTTTT TGATCCAAAGAGAAGGTCTTCAGTACAGAAAAAACTAAAGGTGAAGGTGTACTTGGGCGACGGTTGGCGCCTGGACTTTAGTCACACGCATTTTGACGCT TATTCGCCACCCGACTTCTACACCAAGATATACATTGTCGGGGTACCAGCGGATTCAGCTCGCAAGAAAACCAGGATAATAGAGGACAACTGGTCGCCAA TATGGAACGAAGAGTTCACATTTCCATTGACACTACCAGAGCTAGCATTGGTAAGAATAGAGGTACGGGAATATGACATGTCCGAGAAAGATGATTTTGG GGGGCAGACATGTTTGCCAGTGTCAGAGCTAAGACCAGGGATCCGATCAGTCCCTCTTAGCGATAAAAAAGGGGAGAAACTGAAGAATGTAAAGCTTCTA ATGAGGTTTGAGCTTTTGTAA
AA sequence Show only first row Show all	>Lus10009894 pacid=23180125 polypeptide=Lus10009894 locus=Lus10009894.g ID=Lus10009894.BGIv1.0 annot-version=v1.0 MGKDKRAESEPEENNHNLSKGSYNYRMFSLFNRKFKITEAEPPNDVMHLFRQYAEGHHEMSADHLRNFLIEYQNEADCSLQDAERIVAEVLQRRHHLTRY ARNGLNLDDFFHFLLSGDLNGPINTQVHHDMCAPLSHYFIYTGHNSYLTGNQLSSDCSEVPIIRALQRGVRVIELDLWPNSAKDDVLVLHGRTLTTPVSL YKCLESIKDYAFVRSPYPVIITLEDHLTPELQEKVAEMVIQIFGDMLYYPESDSLVLLPSPELLKYRIMISTKPPKEYLESSGIKHKGTSPRNESEDDYD DEDDGIGTSETETCERNNSYQEDDDLSENHDRSGQLSSPGYKRLITIHAGKPQGALKHALQPIGEKVKRLSLSEHEIEKAASTNGTDVVRFTQKNILRVY PKGTRITSSNYKPIVGWMHGAQMIAFNMQGYGKSLWLMHGMFKANGGCGYVKKPDILMKRGANNEVFDPKRRSSVQKKLKVKVYLGDGWRLDFSHTHFDA YSPPDFYTKIYIVGVPADSARKKTRIIEDNWSPIWNEEFTFPLTLPELALVRIEVREYDMSEKDDFGGQTCLPVSELRPGIRSVPLSDKKGEKLKNVKLL MRFELL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40116			Phosphoinositide-specific phos...		Lus10009894 [exp]	0	1
AT2G47830			Cation efflux family protein (...		Lus10009817 [exp]	1.0	0.8482
AT5G43820			Pentatricopeptide repeat (PPR)...		Lus10010662 [exp]	1.4	0.8372
AT5G61390			Polynucleotidyl transferase, r...		Lus10019078 [exp]	2.6	0.7920
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016438 [exp]	3.5	0.8372
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10016439 [exp]	5.3	0.8311
AT1G60990			Glycine cleavage T-protein fam...		Lus10020818 [exp]	7.3	0.7946
AT3G13810	C2H2ZnF	ATIDD11	indeterminate(ID)-domain 11 (....		Lus10004840 [exp]	8.1	0.7673
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	10.7	0.8127
AT4G10940			RING/U-box protein (.1)		Lus10001535 [exp]	14.1	0.7885
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10028371 [exp]	15.5	0.7650

Compare expression of checked genes

Lus10009894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.