Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31230 603 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G24370 599 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 576 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT5G35380 550 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 484 / 7e-160 protein kinase family protein (.1) AT2G07020 473 / 2e-155 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G12000 464 / 9e-152 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G16760 465 / 1e-151 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G20200 427 / 1e-136 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G17540 368 / 9e-115 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024212 [exp] 1172 / 0 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10042205 [exp] 752 / 0 AT1G16760 691 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 646 / 0 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 598 / 0 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 534 / 0 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008609 [exp] 531 / 2e-179 AT1G16760 417 / 3e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 523 / 5e-177 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10021596 [exp] 523 / 1e-173 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 511 / 3e-169 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G002400 [exp] 581 / 0 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 568 / 0 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G078500 [exp] 531 / 2e-177 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G061600 [exp] 478 / 2e-156 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G225300 [exp] 478 / 2e-156 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G001700 [exp] 442 / 4e-142 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.001G198300 [exp] 437 / 1e-139 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G170742 [exp] 417 / 6e-133 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170901 [exp] 349 / 4e-109 AT1G78940 584 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G233000 [exp] 324 / 1e-97 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09748 [flax] [poplar] Med10 Transcription factor subunit Med10 of Mediator complex CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10009896 pacid=23150097 polypeptide=Lus10009896 locus=Lus10009896.g ID=Lus10009896.BGIv1.0 annot-version=v1.0 ATGGATACTTCACAGAACATAGTCGGAGGGAATGGTGGAAATGGTGTATTGTCTGCCCAGGCAAATGATACTGCTAATTCTGCAACAGCACCAGCCAATG ATACAAAGGAAAATCTGAACCAGGTTATTAACTCTATCCAGAAGATTCTTGGCTACATCCACCAGCTTTACCTCACTGTCTCCTCGTTCAATGCTGCCTC TCAGGCTCCTCTCCTGCAGCGCCTCAATTTACTCATGACAGAGCTAGACAATATGGAGAAACTCTCCGAGAAGTGCAATATTCAAGTTCCCGTGGAGGTT CTTAGTTTAATTGATGATGGAAAAAATCCGGATGAATTCACACGGGATGTCATAAACAGTTGCATTGCAAAAAATCAAGTTACCAAGGGGAAAACTGATG CCTTTAAGGCTCTGCGTAAAAATCTCTTGGATGAACTTGAGCAGGCTTTTCCCGATGAAGTTGAATCATACAGGGAAATACGTGCAATTTCTGCTGCTGT GGTGGCCGTTCCCATTTCCCAAAGGGATCATTTTTTCTTCCCGGAAAAAACCTCCCCCCTGACCGGAATGGCGGCGGCCACCAACAAGAAGAATAACAAT TCCCCACCAGGCGAGCCACAAGTTGTGGCGGTGGCCGTCGACAAGGACAAAGGTAGCCAATTCGCCCTCAAATGGACTATCGAGAATTTGGTCTCCAAAG GAGGTTCCATCATTCTTCTCCATGTCAGGCAAAAGCCTTCCGCGCCAGTATCCTCTTTTCCCGCCTACCCATGTAAATTACAAGACTATACAGACCCTGA TCTTGGAATGCCTCTCGTTTCTTTTACGTTTTGTTCTGATTTTCGATTTTGTGTTTGGGTTTCGAAATCACTTGCAGTCGGAGTAGGAGGTGGGACCCAT CATCAGAATTCCGATCCGAAAGACGACACTGGCGGCGGCGGTGGTGGTGCGAAGAAACCACAGCAATATGACCCCAGCCTAGCCAAGGAGCTTTTCCTTC CCTTCCGCTGCTTCTGCTCCCGAAAAGAGATAAAAACAATTGAAGTTTTGTTGGAGGACACAGAAATTCCAAAGGCAATCACCAATTACTGCCTCACCAA TGTCGTGGACGTTCTTGTACTTGGTACCCCCTCCCGCGGAGGCCTCGTCAGAAGATTCAAGCTGACAGATGTGCCGAGCACAGTTCTTAAAGGGATCCCA GATTTCTGCAGCGTATATGTGATTGGGAAAGGCAAGATTTCCACTCTACGACACGCCACCGGCCCTGCTCCGCGTAGATCTTCCGCCCTTGTCAGCCCAC CCACCAACAATGTCGACTTTGATGACAAGAAGGGATCATCTAACGAAACTTACTATAGCGATTATTCGGACGATGACGGCTCCTACAGGTCATCGGCGAG CAGAGGGAGACCTTCGAGCCTGACGGATACGGACATTTCGTTTATAAGCAGCATTGGAGGCGGCGGAGGAAGGATGAGCGTCGAGCGCATCATGTTTCCT TCTTACGATAACAACGATTTCGGTACCAACCTTCCCAGGCTCTCTGGAGCTTCCAGTTCCGACGTTATTAGCATAGCGTCGTCGTACGGTGGAGGAACCC CTGATTTCGGTGGATACAGCGATTTCTCGACCACCTCTGACATTGATAGCGTCAGGCTTTCTTCTGCTTCCCAGGGAATGGATGATGTTGAGTCAGAGGT CAGGAGGCTCAAATTGGAGCTGAAGCAAACCATGGAGATGTACAACAATGCTTGCAAAGAGGCCCTCACTGCAAAATCTAAGGCAAAGGAGCTGCAGAGA TGGAAAATGGAGAAGCAGCAGAAGATAGAGATGGCAAAGACGGTGGAAGAGGCAGCATTAGCCGCCATCGAACAGGAAAAAGCGAAACGCCAGGCGGCCA TGGAAGCAGTAGAATCAGCTCAGAAGCTAGCGGAACGAGAAGCCCTGAAGAGGAAAAACGCCGAGATGAAACTGATGATCGATTCGGAAGGGAGGAAACA CACAGAGTCCATCGCTCACAACGACCTCCGCTGCCGCCAATACACAATCGAAGAGATCATCGACGCCACCAACGATTTCACCGCCTCTCTCAAAATCGGA GAAGGAGGGTACGGCCCAGTCTACCGCTGCTACCTCGACCACACTCCCGTCGCAATCAAAGCTCTCCACCCGGACGCCGCACAAGGGAGGTCCCAATTCC AGCAGGAAGTGGATATTCTGTCACGAATCCGCCATCCAAACATGGTGCTCTTAATCGGAGCTTGCCCGGAATACGGCTGCTTAATCTATGAATACATGGC TAACGGCAGCTTGGATGATCGCCTTCTCCGGCGAGGGAACACCCCGGCGTTGTCATGGCAGTTGAGATTCAGAATCGCGGCGGAGATCGCAACCGGACTT AATTTCCTCCACCAGACTAAACCGGAGGCGCTGGTCCACCGAGATCTCAAGCCGGGGAATATTTTGTTGGATCGAAATTTCGTCAGTAAAATCAGCGATG TTGGATTGGCGAGGCTGGTTCCGCCGTCGGTGGCGAATAGCATCACGCAGTACCGGATGACGCATACGGCGGGGACGTTCTGCTACATCGATCCGGAGTA TCAGCAGACTGGGATGTTGGGAACCAAATCTGACATTTATTCGCTAGGGATTATCTTCTTGCAGCTGTTGACGGCTAAATCTTTTTGCGGTGTTGGAGGG CAAAGCCGCCGATGGGGCTGA
AA sequence Show only first row Show all	>Lus10009896 pacid=23150097 polypeptide=Lus10009896 locus=Lus10009896.g ID=Lus10009896.BGIv1.0 annot-version=v1.0 MDTSQNIVGGNGGNGVLSAQANDTANSATAPANDTKENLNQVINSIQKILGYIHQLYLTVSSFNAASQAPLLQRLNLLMTELDNMEKLSEKCNIQVPVEV LSLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKALRKNLLDELEQAFPDEVESYREIRAISAAVVAVPISQRDHFFFPEKTSPLTGMAAATNKKNNN SPPGEPQVVAVAVDKDKGSQFALKWTIENLVSKGGSIILLHVRQKPSAPVSSFPAYPCKLQDYTDPDLGMPLVSFTFCSDFRFCVWVSKSLAVGVGGGTH HQNSDPKDDTGGGGGGAKKPQQYDPSLAKELFLPFRCFCSRKEIKTIEVLLEDTEIPKAITNYCLTNVVDVLVLGTPSRGGLVRRFKLTDVPSTVLKGIP DFCSVYVIGKGKISTLRHATGPAPRRSSALVSPPTNNVDFDDKKGSSNETYYSDYSDDDGSYRSSASRGRPSSLTDTDISFISSIGGGGGRMSVERIMFP SYDNNDFGTNLPRLSGASSSDVISIASSYGGGTPDFGGYSDFSTTSDIDSVRLSSASQGMDDVESEVRRLKLELKQTMEMYNNACKEALTAKSKAKELQR WKMEKQQKIEMAKTVEEAALAAIEQEKAKRQAAMEAVESAQKLAEREALKRKNAEMKLMIDSEGRKHTESIAHNDLRCRQYTIEEIIDATNDFTASLKIG EGGYGPVYRCYLDHTPVAIKALHPDAAQGRSQFQQEVDILSRIRHPNMVLLIGACPEYGCLIYEYMANGSLDDRLLRRGNTPALSWQLRFRIAAEIATGL NFLHQTKPEALVHRDLKPGNILLDRNFVSKISDVGLARLVPPSVANSITQYRMTHTAGTFCYIDPEYQQTGMLGTKSDIYSLGIIFLQLLTAKSFCGVGG QSRRWG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24370			Protein kinase protein with ad...		Lus10009896 [exp]	0	1
AT5G10080			Eukaryotic aspartyl protease f...		Lus10019678 [exp]	10.7	0.6936
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Lus10036368 [exp]	12.8	0.7205
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001697 [exp]	13.5	0.7191
AT2G23060			Acyl-CoA N-acyltransferases (N...		Lus10002468 [exp]	19.9	0.6521
AT2G27800			Tetratricopeptide repeat (TPR)...		Lus10011029 [exp]	27.3	0.6886
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10002634 [exp]	30.7	0.6817
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Lus10033618 [exp]	32.6	0.6889
AT1G02290			unknown protein		Lus10028606 [exp]	33.0	0.6806
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10024391 [exp]	34.2	0.6900
AT2G15980			Tetratricopeptide repeat (TPR)...		Lus10020712 [exp]	38.3	0.6703

Compare expression of checked genes

Lus10009896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.