Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31930 52 / 3e-07 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT2G23460 51 / 6e-07 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT4G34390 51 / 7e-07 XLG2 extra-large GTP-binding protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024210 [exp] 469 / 2e-168 AT1G31930 52 / 2e-07 extra-large GTP-binding protein 3 (.1.2.3) Lus10042206 [exp] 263 / 3e-85 AT1G31930 54 / 1e-07 extra-large GTP-binding protein 3 (.1.2.3) Lus10008608 [exp] 237 / 1e-76 AT1G31930 50 / 2e-06 extra-large GTP-binding protein 3 (.1.2.3) Lus10012124 [exp] 54 / 6e-08 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10010421 [exp] 54 / 6e-08 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10023838 [exp] 50 / 1e-06 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1) Lus10021012 [exp] 49 / 2e-06 AT2G23460 769 / 0.0 extra-large G-protein 1 (.1) Lus10019655 [exp] 48 / 8e-06 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G130200 [exp] 242 / 1e-78 AT1G31930 50 / 1e-06 extra-large GTP-binding protein 3 (.1.2.3) Potri.013G157100 [exp] 230 / 6e-74 AT1G31930 51 / 8e-07 extra-large GTP-binding protein 3 (.1.2.3) Potri.001G135300 [exp] 57 / 1e-08 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 54 / 5e-08 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.015G031100 [exp] 54 / 9e-08 AT1G31930 961 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.012G042500 [exp] 52 / 3e-07 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.007G035200 [exp] 51 / 5e-07 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.005G131200 [exp] 51 / 5e-07 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.009G109400 [exp] 50 / 1e-06 AT2G23460 807 / 0.0 extra-large G-protein 1 (.1) Potri.004G148300 [exp] 50 / 2e-06 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009897 pacid=23150095 polypeptide=Lus10009897 locus=Lus10009897.g ID=Lus10009897.BGIv1.0 annot-version=v1.0 ATGGGGGAGAATAAAAGGACGGTGGCGATGGCAAGAATGGAGCTCGAGGATCTATACTCGGGCATCCCGGATGACTCTGTCAACCTCACTTTCCAAGACA TGGCCCAAGTCGATCCGCCCATCAGAATCGGCTCCTTCAACAAAATCCCCTCCCTCGATTTCAACAAAGGCTTGGAATCCAGCCATCTCCAAGGTCAGGG AGGCACCCTGGTGGCGGGGTCTCCTCGTACCCGACAGCATCACCACAACGACAATGTTGTGGTGATGATGGATGCTGTGTCGTACGAACGCAGCAGTCCT CGGAGGAGCGATAGTAATAGCATAATGGCTTTGCCATACCAGCAAACTCCGGCTTATAACCACCATCATGGTAGAGGGGTGACGCCGCCGTACAGTCCTA GTGATTTCAGCCGGAGCAGTGTCGGGACGTCGATGGTTGGGAAAGGAGGTGGAGGGAGGAGACCTGGCATCCCTCATTCTAATATATGTACCATTTGCTC CACTTACATCTATATCTTCAAGAATCGCTGTCTCGTGTGCGGAAGAGTGTACTGCAGGAATTGCTTGAACATGGGGATGGGAGATATGACAGAGGGAAGA AAATGCGTCGAATGTGTTGGAAGACGATTTAGTGCAAGGTACATAAGGAAAGCGGGAGCGATAGGGTGTTGCTCTCGGTATCCGCTGGTGGTGAAGCAAG CAGAGCTGAAGTGGGCGGAGAAAGGTCCGAGGAGGAGCGGCGAGAGAGCCTACGGTAGCCAACATGGTAACCCCAACATGAAATCGGGATCTTCGACGCC GATGGCTAGTCCATTCAATCCGTCAAGGACCCCGCCGTCTTATCTCATGGGCTCCCCTTACTCCCCATACTCCTCTTCTCATCACCACCTCCCACTGTAG
AA sequence Show only first row Show all	>Lus10009897 pacid=23150095 polypeptide=Lus10009897 locus=Lus10009897.g ID=Lus10009897.BGIv1.0 annot-version=v1.0 MGENKRTVAMARMELEDLYSGIPDDSVNLTFQDMAQVDPPIRIGSFNKIPSLDFNKGLESSHLQGQGGTLVAGSPRTRQHHHNDNVVVMMDAVSYERSSP RRSDSNSIMALPYQQTPAYNHHHGRGVTPPYSPSDFSRSSVGTSMVGKGGGGRRPGIPHSNICTICSTYIYIFKNRCLVCGRVYCRNCLNMGMGDMTEGR KCVECVGRRFSARYIRKAGAIGCCSRYPLVVKQAELKWAEKGPRRSGERAYGSQHGNPNMKSGSSTPMASPFNPSRTPPSYLMGSPYSPYSSSHHHLPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34390		XLG2	extra-large GTP-binding protei...		Lus10009897 [exp]	0	1
AT1G54400			HSP20-like chaperones superfam...		Lus10032902 [exp]	8.0	0.8933
					Lus10016134 [exp]	13.3	0.8592
AT5G36930			Disease resistance protein (TI...		Lus10004726 [exp]	13.9	0.8931
AT5G55480		GPDL1, GDPDL4, ...	glycerophosphodiesterase-like ...		Lus10018042 [exp]	14.3	0.8838
AT5G18970			AWPM-19-like family protein (....		Lus10021949 [exp]	14.6	0.8916
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006306 [exp]	17.9	0.8816
AT5G36930			Disease resistance protein (TI...		Lus10010987 [exp]	19.0	0.8895
					Lus10021726 [exp]	19.9	0.8429
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10003156 [exp]	20.6	0.8308
AT5G24620			Pathogenesis-related thaumatin...		Lus10032914 [exp]	22.1	0.8855

Compare expression of checked genes

Lus10009897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.