Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) AT1G14540 400 / 1e-140 Peroxidase superfamily protein (.1) AT5G05340 345 / 1e-118 Peroxidase superfamily protein (.1) AT5G58400 337 / 8e-116 Peroxidase superfamily protein (.1) AT5G58390 300 / 2e-101 Peroxidase superfamily protein (.1) AT4G36430 297 / 8e-100 Peroxidase superfamily protein (.1) AT2G18150 292 / 9e-98 Peroxidase superfamily protein (.1) AT2G18140 288 / 2e-96 Peroxidase superfamily protein (.1) AT5G66390 281 / 1e-93 Peroxidase superfamily protein (.1) AT1G44970 279 / 1e-92 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009902 [exp] 558 / 0 AT1G14550 441 / 8e-157 Peroxidase superfamily protein (.1) Lus10024208 [exp] 556 / 0 AT1G14550 442 / 3e-157 Peroxidase superfamily protein (.1) Lus10009900 [exp] 524 / 0 AT1G14550 436 / 1e-154 Peroxidase superfamily protein (.1) Lus10024209 [exp] 395 / 1e-138 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1) Lus10009899 [exp] 340 / 1e-116 AT1G14550 367 / 2e-127 Peroxidase superfamily protein (.1) Lus10009932 [exp] 332 / 5e-112 AT5G05340 419 / 6e-146 Peroxidase superfamily protein (.1) Lus10034207 [exp] 323 / 5e-110 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10030148 [exp] 318 / 1e-108 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10030149 [exp] 320 / 3e-108 AT5G05340 405 / 8e-142 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G236870 [exp] 447 / 2e-159 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.010G236850 [exp] 447 / 2e-159 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236910 [exp] 447 / 2e-159 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236900 [exp] 446 / 1e-158 AT1G14550 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 436 / 6e-155 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.008G022232 [exp] 426 / 1e-150 AT1G14550 401 / 6e-141 Peroxidase superfamily protein (.1) Potri.008G022248 [exp] 425 / 2e-150 AT1G14540 404 / 3e-142 Peroxidase superfamily protein (.1) Potri.008G022700 [exp] 424 / 3e-150 AT1G14540 404 / 4e-142 Peroxidase superfamily protein (.1) Potri.008G022501 [exp] 422 / 2e-149 AT1G14550 434 / 3e-154 Peroxidase superfamily protein (.1) Potri.001G458700 [exp] 409 / 7e-144 AT1G14540 394 / 4e-138 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10009898 pacid=23150138 polypeptide=Lus10009898 locus=Lus10009898.g ID=Lus10009898.BGIv1.0 annot-version=v1.0 ATGACCAAATCATCCATTTGGGTAGTGTTGTTACTCATGCTGCTGAGTATTGCAATAAGCCAGTCCGAAGCACAACAACAGCTGTCCACAAACTTCTACG CCAATTCATGCCCCAAAGCTCTCTCCACCATAAGGAGATCCATCACCACAGCCATCTCGAGGGAGCGAAGAATGGCCGCGTCTCTACTCCGTCTCCATTT CCACGACTGCTTCGTCCAAGGTTGCGACGCTTCCATATTGCTCGACCAATCCCCAACCATCCAATCCGAGAAAATGGCTGCTCCGAATGATAAATCAGCT CGAGGCTACGAAGTCATCGACGCTGCCAAGGCCCAAGTGGAGAGGATATGCCCTGGTGTTGTCTCGTGCGCAGATATTATCGCTGTTGCTGCTAGAGATG CTACTGCCTATGTGGGAGGCCCCTCTTGGAATGTGAAGCTTGGGAGAAGAGATTCGACTTCTGCTTTCCCTGATTTGGCTCTTACTGATTTGCCGTTCTT CAAAGAGGATCTTCAAACTCTTATCGACCGGTTTCAGGGGAAAGGGCTTAGTCCTAGAGACATGGTCGCCCTCTCTGGGGCTCATACTTTGGGGCAAGCT CAATGTTTCACCTTTCGCGATAGGATTTATAGCAATGGTACCGACATTGATGCTGGATTCGCTAGCACAAGGAGACGTCGATGCCCGATGGTAGGGGGTG ACACCAATCTGGCACCGTTTGATCTGGTGACTCCCAACTCGTTTGATAATAACTACTTCAGGAATCTTGTACAGAGGAAGGGATTGCTTGTAACTGACCA AGTTCTCTTCAGTGGGGGATCTACTGATAGCATTGTGCTAGAGTATAGTAGGAATCGAGCTAGGTTCAATGCCGATTTCGCTGCTGCCATGATTAGGATG GGTGATATCCAGCCGTTGACCGGTTCTGCTGGGCAAATCAGGAGGATCTGTGGCGCCGTCAACAACTGA
AA sequence Show only first row Show all	>Lus10009898 pacid=23150138 polypeptide=Lus10009898 locus=Lus10009898.g ID=Lus10009898.BGIv1.0 annot-version=v1.0 MTKSSIWVVLLLMLLSIAISQSEAQQQLSTNFYANSCPKALSTIRRSITTAISRERRMAASLLRLHFHDCFVQGCDASILLDQSPTIQSEKMAAPNDKSA RGYEVIDAAKAQVERICPGVVSCADIIAVAARDATAYVGGPSWNVKLGRRDSTSAFPDLALTDLPFFKEDLQTLIDRFQGKGLSPRDMVALSGAHTLGQA QCFTFRDRIYSNGTDIDAGFASTRRRRCPMVGGDTNLAPFDLVTPNSFDNNYFRNLVQRKGLLVTDQVLFSGGSTDSIVLEYSRNRARFNADFAAAMIRM GDIQPLTGSAGQIRRICGAVNN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14550			Peroxidase superfamily protein...		Lus10009898 [exp]	0	1
AT1G17860			Kunitz family trypsin and prot...		Lus10011090 [exp]	2.0	0.9670
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10032303 [exp]	4.7	0.9547
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10037209 [exp]	5.3	0.9405
AT5G62750			unknown protein		Lus10004267 [exp]	7.2	0.9103
AT3G29970			B12D protein (.1)		Lus10035132 [exp]	7.4	0.9297
AT5G56350			Pyruvate kinase family protein...		Lus10003439 [exp]	7.9	0.9407
					Lus10028589 [exp]	8.0	0.9314
AT1G17860			Kunitz family trypsin and prot...		Lus10039208 [exp]	8.9	0.9308
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10019183 [exp]	9.2	0.9401
AT4G16260			Glycosyl hydrolase superfamily...		Lus10016883 [exp]	11.2	0.9314

Compare expression of checked genes

Lus10009898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.