Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14550 333 / 7e-114 Peroxidase superfamily protein (.1) AT1G14540 320 / 3e-109 Peroxidase superfamily protein (.1) AT5G05340 308 / 3e-104 Peroxidase superfamily protein (.1) AT5G58400 287 / 5e-96 Peroxidase superfamily protein (.1) AT4G36430 285 / 4e-95 Peroxidase superfamily protein (.1) AT2G18150 278 / 4e-92 Peroxidase superfamily protein (.1) AT5G66390 273 / 4e-90 Peroxidase superfamily protein (.1) AT5G58390 267 / 3e-88 Peroxidase superfamily protein (.1) AT2G18140 266 / 1e-87 Peroxidase superfamily protein (.1) AT5G06720 265 / 4e-87 ATPA2 peroxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024207 [exp] 513 / 0 AT1G14550 322 / 2e-110 Peroxidase superfamily protein (.1) Lus10009900 [exp] 357 / 3e-123 AT1G14550 436 / 1e-154 Peroxidase superfamily protein (.1) Lus10009898 [exp] 351 / 5e-121 AT1G14550 448 / 1e-159 Peroxidase superfamily protein (.1) Lus10024208 [exp] 349 / 2e-120 AT1G14550 442 / 3e-157 Peroxidase superfamily protein (.1) Lus10009902 [exp] 349 / 3e-120 AT1G14550 441 / 8e-157 Peroxidase superfamily protein (.1) Lus10024209 [exp] 315 / 1e-106 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1) Lus10034207 [exp] 299 / 1e-100 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10025255 [exp] 299 / 2e-100 AT5G05340 337 / 2e-115 Peroxidase superfamily protein (.1) Lus10030148 [exp] 293 / 1e-98 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G022232 [exp] 353 / 7e-122 AT1G14550 401 / 6e-141 Peroxidase superfamily protein (.1) Potri.008G022700 [exp] 352 / 2e-121 AT1G14540 404 / 4e-142 Peroxidase superfamily protein (.1) Potri.008G022248 [exp] 350 / 1e-120 AT1G14540 404 / 3e-142 Peroxidase superfamily protein (.1) Potri.008G022501 [exp] 349 / 2e-120 AT1G14550 434 / 3e-154 Peroxidase superfamily protein (.1) Potri.010G236850 [exp] 348 / 6e-120 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236910 [exp] 348 / 6e-120 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 347 / 1e-119 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 345 / 5e-119 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.010G236900 [exp] 344 / 2e-118 AT1G14550 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.001G458900 [exp] 318 / 3e-108 AT1G14540 389 / 3e-136 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10009899 pacid=23150132 polypeptide=Lus10009899 locus=Lus10009899.g ID=Lus10009899.BGIv1.0 annot-version=v1.0 ATGTCATCACTAACTGCAGTTTATCTGCTCATTACGCTGATACTACTGACCTCAACGCTACAACATTGCCAATCATTAGACCTCTCCCCACAATTCTACT CCCAAAAATGCCCTCGAGCACTCACAGCCATCCGATCCACCGTCCAGGCCGCTATCACAAAGGACCGTAGGATGGCTGCGTCGTTAATCCGCCTCCAATT CCACGACTGCTTCGCCCACGGCTGCGACGCTTCCGTCCTACTCGACCAAACCGGAACCTCCACCCAAACCGAGAAAGCCGCCATCCCGAATCGAAGATTC GCGAAAACCTTCCAGGTCATCGAGGACGCTAAATCCAGCCTGGAAAAGATGTGCCCCGGCGTCGTATCTTGCGCCGACATTATCGCTGTCGCCGCTAGAG ACGCCTCTGCCGCCGTGGAGGGACCCGCCTGGGATGTGAAGCTGGGGCGGCGAGATTCGAACGCGGCATTTCTATCGGAAGCGAATTCGGACATTCCCGG GCCTAAAGACGACCTCCCGACGCTGATTGCCGAGTTCCAGAAAAAGGGGCTCACCGCCAGGGAAATGGTTGTCTTATCGGGAGCTCATACGTTGGGATTC GCACAGTGCTTTACGTTCCGCGACAGGATCTACGATTCTAACGGGACGAATGCGGCGGTGAACAAAATTATCGATCCCGATTTTGCTAGGAAGAAGAGGA AGGCTTGCCCGGCGCAGGGCGGAGACAGGTTCCTCGCGCCGCTTGATGTGGTGACGCCCAAGTCGTTTGATAATAACTATTTCAAGACGCTGATGAAGAA GAAGGGGCTATTGGAGTCCGATCAGGCTCTTTATAGCGGCGGCTCCACGGATCAGATTGTTGAGGAGTACAGTAGGGACGGGAACAAGTTTAGTATGGAT TTCGCGGCGGCGATGGTTAAGATGGGTGATATCGGAGTGATGACCGGTAATAATGGTCAGATTAGGAAGGTTTGCAGGAGGGCCAATTAA
AA sequence Show only first row Show all	>Lus10009899 pacid=23150132 polypeptide=Lus10009899 locus=Lus10009899.g ID=Lus10009899.BGIv1.0 annot-version=v1.0 MSSLTAVYLLITLILLTSTLQHCQSLDLSPQFYSQKCPRALTAIRSTVQAAITKDRRMAASLIRLQFHDCFAHGCDASVLLDQTGTSTQTEKAAIPNRRF AKTFQVIEDAKSSLEKMCPGVVSCADIIAVAARDASAAVEGPAWDVKLGRRDSNAAFLSEANSDIPGPKDDLPTLIAEFQKKGLTAREMVVLSGAHTLGF AQCFTFRDRIYDSNGTNAAVNKIIDPDFARKKRKACPAQGGDRFLAPLDVVTPKSFDNNYFKTLMKKKGLLESDQALYSGGSTDQIVEEYSRDGNKFSMD FAAAMVKMGDIGVMTGNNGQIRKVCRRAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14550			Peroxidase superfamily protein...		Lus10009899 [exp]	0	1
AT1G77100			Peroxidase superfamily protein...		Lus10028631 [exp]	1.0	0.9053
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10034208 [exp]	3.2	0.8814
					Lus10024932 [exp]	4.9	0.8813
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10013327 [exp]	8.4	0.8611
AT5G38200			Class I glutamine amidotransfe...		Lus10016700 [exp]	9.4	0.8769
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10004906 [exp]	11.7	0.8557
AT5G03990			unknown protein		Lus10019039 [exp]	16.6	0.7426
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10019728 [exp]	36.1	0.8217
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10021325 [exp]	38.7	0.7866
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Lus10021206 [exp]	39.8	0.8126

Compare expression of checked genes

Lus10009899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.