Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14550 436 / 1e-154 Peroxidase superfamily protein (.1) AT1G14540 434 / 4e-154 Peroxidase superfamily protein (.1) AT5G05340 359 / 2e-124 Peroxidase superfamily protein (.1) AT5G58400 356 / 5e-123 Peroxidase superfamily protein (.1) AT5G58390 319 / 9e-109 Peroxidase superfamily protein (.1) AT4G36430 305 / 6e-103 Peroxidase superfamily protein (.1) AT2G18150 294 / 2e-98 Peroxidase superfamily protein (.1) AT5G06720 290 / 4e-97 ATPA2 peroxidase 2 (.1) AT2G18140 289 / 2e-96 Peroxidase superfamily protein (.1) AT5G06730 288 / 4e-96 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009902 [exp] 573 / 0 AT1G14550 441 / 8e-157 Peroxidase superfamily protein (.1) Lus10009898 [exp] 564 / 0 AT1G14550 448 / 1e-159 Peroxidase superfamily protein (.1) Lus10024208 [exp] 560 / 0 AT1G14550 442 / 3e-157 Peroxidase superfamily protein (.1) Lus10024209 [exp] 421 / 1e-148 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1) Lus10009899 [exp] 368 / 1e-127 AT1G14550 367 / 2e-127 Peroxidase superfamily protein (.1) Lus10024207 [exp] 337 / 2e-116 AT1G14550 322 / 2e-110 Peroxidase superfamily protein (.1) Lus10030149 [exp] 335 / 2e-114 AT5G05340 405 / 8e-142 Peroxidase superfamily protein (.1) Lus10009932 [exp] 336 / 2e-113 AT5G05340 419 / 6e-146 Peroxidase superfamily protein (.1) Lus10030148 [exp] 330 / 2e-113 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G236850 [exp] 482 / 5e-173 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236910 [exp] 482 / 5e-173 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 478 / 2e-171 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.010G236900 [exp] 476 / 2e-170 AT1G14550 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 466 / 1e-166 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.008G022248 [exp] 455 / 3e-162 AT1G14540 404 / 3e-142 Peroxidase superfamily protein (.1) Potri.008G022700 [exp] 453 / 1e-161 AT1G14540 404 / 4e-142 Peroxidase superfamily protein (.1) Potri.008G022232 [exp] 452 / 3e-161 AT1G14550 401 / 6e-141 Peroxidase superfamily protein (.1) Potri.008G022501 [exp] 449 / 5e-160 AT1G14550 434 / 3e-154 Peroxidase superfamily protein (.1) Potri.001G458900 [exp] 435 / 3e-154 AT1G14540 389 / 3e-136 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10009900 pacid=23150082 polypeptide=Lus10009900 locus=Lus10009900.g ID=Lus10009900.BGIv1.0 annot-version=v1.0 ATGGCCAGCTTCACTATATCAGCATCTTTCCTAGTGCTGTTGGTTCTGATGAGCATGACGATAAAGCTGTCTCGAGCACAGCAGCTATCCACAAACTTCT ACGCCAACACATGTCCCAATGCCCTATCAACAATCAGGACATCCATCAGGACGTCCATCGCCAGAGAACGAAGAATGGCTGCGTCGCTCCTCCGTCTCCA CTTCCACGACTGCTTCGTCCAAGGATGCGACGCTTCGATATTGCTGGACAAATCCCCAACCATTATCCAGTCCGAGAAAACCGCACCCCCAAATGGCAAA TCTGTCCGGGGCTACGAAGTCATCGACGCTGCCAAAGCCCAAGTCGAGAGGATATGCCCTGGCGTCGTCTCGTGCGCAGACATCATCGCTGTCGCTGCCA GGGACGCCTCTGCCTATGTGGGAGGCCCATCGTGGGACGTGAAGCTCGGCAGAAGAGATTCGACTTCTGCTTTCCCCGATTTGTCCCTTACTGACTTGCC GTTTTTCAAAGAGGACCTTCAGACACTTATCGACCGGTTTCAGGGGAAAGGGCTTAGTCCTAGAGACATGGTTGCGCTCTCTGGCGCTCATACTTTGGGA CAAGCTCAATGCTTCACCTTTCGCGATAGGATTTATAGCAATGGTACAGACATTGATGCTGGATTCGCTAGCACAAGAAGACGTAGATGTCCGGTTGAAG GAGGAGACGAGACATTGGCACCTTTGGATCTCGTAACGCCCAACTCCTTTGATAATAACTACTTCAGGGATCTGATGCAGAGGAAGGGACTCCTTGTTAC GGACCAGGAACTCTTCAGCGGGGGCTCTACGGATAGCATTGTGGTCGAATACAGTAGGAGTCCTGCTCGATTCAGTGCTGATTTCGCTGCGGCGATGGTC AAGATGGGTGACATCCAGCCATTGACAGGCTCGGCTGGGGAAATCAGAAGGATATGTGGATCCGTTAACAGTTGA
AA sequence Show only first row Show all	>Lus10009900 pacid=23150082 polypeptide=Lus10009900 locus=Lus10009900.g ID=Lus10009900.BGIv1.0 annot-version=v1.0 MASFTISASFLVLLVLMSMTIKLSRAQQLSTNFYANTCPNALSTIRTSIRTSIARERRMAASLLRLHFHDCFVQGCDASILLDKSPTIIQSEKTAPPNGK SVRGYEVIDAAKAQVERICPGVVSCADIIAVAARDASAYVGGPSWDVKLGRRDSTSAFPDLSLTDLPFFKEDLQTLIDRFQGKGLSPRDMVALSGAHTLG QAQCFTFRDRIYSNGTDIDAGFASTRRRRCPVEGGDETLAPLDLVTPNSFDNNYFRDLMQRKGLLVTDQELFSGGSTDSIVVEYSRSPARFSADFAAAMV KMGDIQPLTGSAGEIRRICGSVNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14550			Peroxidase superfamily protein...		Lus10009900 [exp]	0	1
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10012724 [exp]	1.4	0.9946
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Lus10043312 [exp]	3.7	0.9906
					Lus10005629 [exp]	6.7	0.9901
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10029395 [exp]	7.7	0.9753
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10005107 [exp]	7.7	0.9861
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008917 [exp]	9.5	0.9866
AT1G14540			Peroxidase superfamily protein...		Lus10009904 [exp]	9.8	0.9819
AT4G35160			O-methyltransferase family pro...		Lus10006692 [exp]	10.2	0.9702
AT1G14550			Peroxidase superfamily protein...		Lus10009902 [exp]	10.2	0.9868
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10027480 [exp]	11.1	0.9752

Compare expression of checked genes

Lus10009900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.