Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49570 385 / 4e-134 Peroxidase superfamily protein (.1) AT5G06720 320 / 7e-109 ATPA2 peroxidase 2 (.1) AT5G19890 318 / 3e-108 Peroxidase superfamily protein (.1) AT5G06730 318 / 6e-108 Peroxidase superfamily protein (.1) AT5G05340 301 / 1e-101 Peroxidase superfamily protein (.1) AT4G36430 295 / 3e-99 Peroxidase superfamily protein (.1) AT2G18150 287 / 5e-96 Peroxidase superfamily protein (.1) AT2G18140 284 / 1e-94 Peroxidase superfamily protein (.1) AT5G19880 277 / 4e-92 Peroxidase superfamily protein (.1) AT5G15180 277 / 4e-92 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020994 [exp] 407 / 5e-143 AT1G49570 418 / 5e-147 Peroxidase superfamily protein (.1) Lus10023858 [exp] 342 / 2e-117 AT1G49570 361 / 9e-125 Peroxidase superfamily protein (.1) Lus10026748 [exp] 310 / 7e-105 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10025535 [exp] 310 / 2e-103 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10004163 [exp] 301 / 1e-101 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10034207 [exp] 294 / 8e-99 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10032786 [exp] 291 / 1e-97 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10003573 [exp] 290 / 2e-97 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10041784 [exp] 285 / 3e-95 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G135300 [exp] 487 / 7e-175 AT1G49570 408 / 3e-143 Peroxidase superfamily protein (.1) Potri.004G144600 [exp] 400 / 2e-140 AT1G49570 400 / 8e-140 Peroxidase superfamily protein (.1) Potri.009G106400 [exp] 392 / 2e-137 AT1G49570 429 / 2e-151 Peroxidase superfamily protein (.1) Potri.003G214500 [exp] 323 / 2e-110 AT5G19890 422 / 4e-149 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 305 / 5e-103 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 302 / 4e-102 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.016G058200 [exp] 300 / 4e-101 AT5G06720 428 / 2e-151 peroxidase 2 (.1) Potri.003G214800 [exp] 298 / 3e-100 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.003G214700 [exp] 297 / 2e-99 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.008G022700 [exp] 291 / 1e-97 AT1G14540 404 / 4e-142 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10009901 pacid=23150078 polypeptide=Lus10009901 locus=Lus10009901.g ID=Lus10009901.BGIv1.0 annot-version=v1.0 ATGGATACCAGTTTGTTCAAACTTCCCTTGTACTGCCTTGTTCTGATCACGTTGATCCCTCTTGTGACATGCCAACTTGACTACAACTTCTACGGTGGTT CCTGTCCGAGCCTGACAAAGATGGTTAAATATGGTGTCTGGTCTGCCATTTCTAATGATACCAGGATGGCTGCTTCCCTCCTGCGCCTTCACTTCCATGA TTGTTTTGTTAACGGATGTGATGGATCTGTTTTGCTGGACGGTGGGGAGAAAAACGCCCTTCCGAATCGAAATTCAGCCAGAGGATTTGAAGTCATTGAT AACATCAACGCCAACTTGGAAAAAGCCTGTCCCGGAATTGTCTCTTGTACTGATATTCTTACTCTTGCAGCCAGAGAAGCGGTTTCTCTCATAGGAGGGC CATACTGGGGACTTGCTTTAGGCAGGAGGGATGGGATGACATCAAGCGAGAGTGCAGCAAACGAGCAGCTCCCAGGACCATTCGAGTCATTGGACAACAT TACTAGAAAGTTCATAGCAAAGGGTCTCGATTTGAAAGACATAGTTGTGCTCTCAGGAGCGCACACGATTGGTTTTGCTCAGTGTGGAGTGGTCAAGCCT AGGCTTTTCGACTTTGGTGGCTCTGGGGGACCGGATCCATCGCTCGATGCATCGTTTCTCCAGACCCTACAGAATATCTGCCCAAACCAGAATGATTCCA ACGCTAAGTTGGCTCCTCTGGATACAAGTTCAACCAAGTTTGATAACCTTTACTACAAGCTACTAATGAATAGCTCAGGGTTGTTGCAGTCCGACCAAGC TTTGATGTCGGATAACACGACTGCTTCGATGGTTATTAACTATAGCAAGTTCCCTTTCCTATTCTACAAGGATTTTGGAATTTCAATGGTGAAAATGGCT GGTATTGGCGTGCTCACTGGGAGTGATGGGGAGATCAGGAAGAATTGTAGGGTGGTAAACTAG
AA sequence Show only first row Show all	>Lus10009901 pacid=23150078 polypeptide=Lus10009901 locus=Lus10009901.g ID=Lus10009901.BGIv1.0 annot-version=v1.0 MDTSLFKLPLYCLVLITLIPLVTCQLDYNFYGGSCPSLTKMVKYGVWSAISNDTRMAASLLRLHFHDCFVNGCDGSVLLDGGEKNALPNRNSARGFEVID NINANLEKACPGIVSCTDILTLAAREAVSLIGGPYWGLALGRRDGMTSSESAANEQLPGPFESLDNITRKFIAKGLDLKDIVVLSGAHTIGFAQCGVVKP RLFDFGGSGGPDPSLDASFLQTLQNICPNQNDSNAKLAPLDTSSTKFDNLYYKLLMNSSGLLQSDQALMSDNTTASMVINYSKFPFLFYKDFGISMVKMA GIGVLTGSDGEIRKNCRVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49570			Peroxidase superfamily protein...		Lus10009901 [exp]	0	1
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Lus10023918 [exp]	1.4	0.9434
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10008291 [exp]	4.5	0.9486
					Lus10037168 [exp]	7.0	0.8956
AT1G67910			unknown protein		Lus10023632 [exp]	10.5	0.9396
AT5G14890			NHL domain-containing protein ...		Lus10032160 [exp]	12.5	0.9191
					Lus10011203 [exp]	14.0	0.8541
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001050 [exp]	14.2	0.8873
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10000958 [exp]	14.4	0.8755
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10036579 [exp]	14.9	0.9304
AT3G01430			unknown protein		Lus10014527 [exp]	18.1	0.9379

Compare expression of checked genes

Lus10009901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.