Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14540 419 / 3e-148 Peroxidase superfamily protein (.1) AT1G14550 419 / 3e-148 Peroxidase superfamily protein (.1) AT5G58400 354 / 2e-122 Peroxidase superfamily protein (.1) AT5G05340 354 / 2e-122 Peroxidase superfamily protein (.1) AT5G58390 322 / 6e-110 Peroxidase superfamily protein (.1) AT4G36430 302 / 8e-102 Peroxidase superfamily protein (.1) AT2G18150 289 / 1e-96 Peroxidase superfamily protein (.1) AT2G18140 286 / 2e-95 Peroxidase superfamily protein (.1) AT5G66390 282 / 6e-94 Peroxidase superfamily protein (.1) AT3G50990 280 / 4e-93 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024208 [exp] 586 / 0 AT1G14550 442 / 3e-157 Peroxidase superfamily protein (.1) Lus10009898 [exp] 580 / 0 AT1G14550 448 / 1e-159 Peroxidase superfamily protein (.1) Lus10009900 [exp] 550 / 0 AT1G14550 436 / 1e-154 Peroxidase superfamily protein (.1) Lus10024209 [exp] 402 / 5e-141 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1) Lus10009899 [exp] 342 / 2e-117 AT1G14550 367 / 2e-127 Peroxidase superfamily protein (.1) Lus10009932 [exp] 338 / 4e-114 AT5G05340 419 / 6e-146 Peroxidase superfamily protein (.1) Lus10034207 [exp] 325 / 4e-111 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10030149 [exp] 325 / 2e-110 AT5G05340 405 / 8e-142 Peroxidase superfamily protein (.1) Lus10032786 [exp] 317 / 4e-108 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G236870 [exp] 458 / 2e-163 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.010G236850 [exp] 456 / 5e-163 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236910 [exp] 456 / 5e-163 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236900 [exp] 456 / 1e-162 AT1G14550 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 442 / 4e-157 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.008G022248 [exp] 439 / 5e-156 AT1G14540 404 / 3e-142 Peroxidase superfamily protein (.1) Potri.008G022700 [exp] 439 / 5e-156 AT1G14540 404 / 4e-142 Peroxidase superfamily protein (.1) Potri.008G022232 [exp] 437 / 2e-155 AT1G14550 401 / 6e-141 Peroxidase superfamily protein (.1) Potri.008G022501 [exp] 434 / 3e-154 AT1G14550 434 / 3e-154 Peroxidase superfamily protein (.1) Potri.001G458700 [exp] 416 / 5e-147 AT1G14540 394 / 4e-138 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10009902 pacid=23150093 polypeptide=Lus10009902 locus=Lus10009902.g ID=Lus10009902.BGIv1.0 annot-version=v1.0 ATGGCCAAATCATCATTTTGGGCACTGATACTCGTGTTGCTGTGTATTGCAATAAGCCAGTCCGAAGCACAACTGTCCACAAACTTCTACGCCAATTCAT GCCCCAACGCTCTCTCTACCATAAGGAGATCCATCACCACAGCCATCTCGAGGGAGCGAAGAATGGCCGCGTCTCTACTCCGTCTCCATTTCCACGACTG CTTCGTCCAAGGATGCGACGCTTCCATATTGCTGGACCAATCACCCACCATTGAATCCGAGAAAACCGCTGCCCCGAATGACAAATCAGCTCGAGGGTAC GAAGTCATTGACGCTGCCAAGGCCCAAGTGGAGAGGATATGCCCTGGAGTTGTGTCCTGTGCGGACATTATCGCAGTTGCTGCCAGAGATGCCTCTGCAT ATGTAGGAGGCCCCTCTTGGAATGTGAAGCTTGGCAGAAGAGATTCGACTTCAGCTTTCCCTGATTTGGCTCTTACAGACTTGCCGTTCTTCAAAGAGGA CCTTCAATCTCTTATCGACCGGTTTCAGGGGAAAGGGCTTAGTCCTAGAGACATGGTCGCGCTCTCTGGCGCTCATACTCTGGGACAAGCTCAATGCTTC ACATTTCGCGATAGGATTTATAGCAATGGTACCGACATTGATGCTGGATTCGCTAGCACACGAAGACGTAGATGCCCGGTCGAAGGCGGGGACGAGACAT TGGCGCCGTTAGATTTGGTGACGCCCAACTCCTTTGATAATAACTACTTCAGGGATCTTGTGCAGAGGAAGGGACTCCTTGTAACGGACCAGGTTCTCTT CAATGGGGGCTCTACTGATAGCATTGTGGTGGAGTATAGTAGGAATCGAGCCAGGTTCAATGCCGATTTCGCAGCTGCCATGATTCGGATGGGTGACATC CAGCCGTTGACCGGTTCTGCTGGGCAAATCAGGAGGATATGTGGTGCCATCAACAACTGA
AA sequence Show only first row Show all	>Lus10009902 pacid=23150093 polypeptide=Lus10009902 locus=Lus10009902.g ID=Lus10009902.BGIv1.0 annot-version=v1.0 MAKSSFWALILVLLCIAISQSEAQLSTNFYANSCPNALSTIRRSITTAISRERRMAASLLRLHFHDCFVQGCDASILLDQSPTIESEKTAAPNDKSARGY EVIDAAKAQVERICPGVVSCADIIAVAARDASAYVGGPSWNVKLGRRDSTSAFPDLALTDLPFFKEDLQSLIDRFQGKGLSPRDMVALSGAHTLGQAQCF TFRDRIYSNGTDIDAGFASTRRRRCPVEGGDETLAPLDLVTPNSFDNNYFRDLVQRKGLLVTDQVLFNGGSTDSIVVEYSRNRARFNADFAAAMIRMGDI QPLTGSAGQIRRICGAINN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14550			Peroxidase superfamily protein...		Lus10009902 [exp]	0	1
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10021313 [exp]	1.4	0.9946
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10006984 [exp]	2.4	0.9942
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10022762 [exp]	3.0	0.9953
AT4G37290			unknown protein		Lus10019310 [exp]	4.9	0.9940
AT5G39160			RmlC-like cupins superfamily p...		Lus10032015 [exp]	8.5	0.9891
AT1G35210			unknown protein		Lus10010343 [exp]	9.0	0.9918
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028377 [exp]	9.4	0.9920
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10012879 [exp]	9.5	0.9927
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Lus10004808 [exp]	9.8	0.9854
AT5G37490			ARM repeat superfamily protein...		Lus10001079 [exp]	9.8	0.9924

Compare expression of checked genes

Lus10009902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.