Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57260 357 / 2e-118 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G26310 355 / 2e-117 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26330 354 / 4e-117 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT5G25140 350 / 1e-115 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT3G26210 350 / 2e-115 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT3G26280 348 / 1e-114 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT2G24180 347 / 4e-114 CYP71B6 cytochrome p450 71b6 (.1) AT3G26320 347 / 4e-114 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT4G13310 343 / 1e-112 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT3G48310 342 / 2e-112 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019157 [exp] 639 / 0 AT3G48300 358 / 1e-118 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) Lus10019159 [exp] 632 / 0 AT3G26330 365 / 1e-121 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10016601 [exp] 517 / 1e-180 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10030924 [exp] 487 / 1e-168 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10040120 [exp] 479 / 2e-165 AT3G48280 377 / 5e-126 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10029035 [exp] 478 / 3e-165 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10034230 [exp] 476 / 2e-164 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10030708 [exp] 472 / 5e-163 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10012767 [exp] 469 / 6e-162 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 518 / 0 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 507 / 6e-177 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 505 / 4e-176 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 494 / 1e-171 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 488 / 2e-169 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 487 / 5e-169 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 484 / 7e-168 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 470 / 3e-162 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 458 / 9e-158 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.015G028000 [exp] 444 / 4e-152 AT1G13080 326 / 3e-106 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10009903 pacid=23150120 polypeptide=Lus10009903 locus=Lus10009903.g ID=Lus10009903.BGIv1.0 annot-version=v1.0 ATGGATTTTCCACAACTCCCACCGACTACTCCTTTGAGTTCCATCCATATTATCCTCCTGCTAACCATCCTCTCTCTGGCCGCCATCTGGCGATTGCTCA TAGTCAACCGAAATTCAACGCACCAACATATCAAATTACCTCCAGGTCCCCTGAAGCTACCGATAATCGGAAACATGCACCAACTCCTCCACCCTCTGGC CCACCGCCGTCTCAGAGACCTAGCCGCGGAACACGGGCCAATCATGCATCTCAACCTCGGCCAAGTATCGACCGTCGTCGTTTCGTCCCCGGAAATGGCC AAACACGTGATGAAAACCCACGATGTCAATTTCGCCAACCGCCCTTTCCTACTCGCCCCCAAAGTCATATTCGATGGAGTTGATATTGCGTTTTCCCCCT ACGGAGAATACTGGCGGCAGCTCCGTAGGGTCTGCACCCTAGAGCTCCTCAGCTCCAGCCGAGTCGGGTCATACCGCTCCATCCGTGAACAAGAGACCGC CAGTTTCGTCGGAGAAATCGCTTCCAAGCAGGGGTCGTTGATTAATCTGACTCAGATGATAAGTTCAGTAACGAATTCCATTACCTCGAGGGCGGCCTTC GGGAACATATGCCGGGGAAAGGACGAGTTCATTAGTCTCGCCGTGAAGGCTATCGACATTGCAGGGGGGTTCAATTTGCCTGATATGTTTCCTTCTGCTA AATGGCTTCATATATTTAGCGGGGTTGAGGGTAAATTGGTCAAAATACGTGAGGGAACTGATCGGATCCTCCAGAATATCATTGATGAGCATAGAGCCAT GCCAAAAAACAGTGACACTAACAGTAACGATCTTGTGGATGTTCTACTGATGGCTCAGGAAGATGGGCAGATTGAATTCCCCTTACCTGGTGATTCCTGT ATCAAAGCTGTTATCATGGATATATTTACGGCTGGAAGCGAGACATCATCAACAGTCTTGGGATGGACAATGGCAGAGTTACTGAGAAATCCAAGAGTGT ACAACAAGGCACAAAATGAAGTAAGACGAGTGTTCAAAAGAAGTGGAATGGTTAAAGAAGAGGGAGTTGGTGAATTAAACTATTTGAAAATGGTGATCAA AGAAACAATGAGGCTACACCCTCCAGTGGCGCTACTACTTCCAAGGGAAAACAGAGAAGATTGTAAGATCGAAGGGTATGATATTCCGGCGAAGACCAGA GTCATTGTCAATGCTTGGGCTATCGGAAGAGATCCCAAATATTGGACCGAACCCGAAAGGTTTTGGCCGGAGAGGTTCGTGGATGTTCAGATGGATTATC AGGGTACGGATTTTGCATTCATTCCGTTTGGTGCAGGGAGAAGGATATGCCCCGGGATAGCCTTTGGAATGGCCAACATTGAACTTCCCTTGGCTAGTTT GTTGTTTCACTTTGACTGGAAAACTGAAGATGGATCGCCACTTGAAGACTTGGACATATCTGAATCCTTTGGTGCTGCAGTGACGAGGAAGCATGACCTC TGCTTGATTCCTGTCTCGTCAATTATTAAAAGCTGA
AA sequence Show only first row Show all	>Lus10009903 pacid=23150120 polypeptide=Lus10009903 locus=Lus10009903.g ID=Lus10009903.BGIv1.0 annot-version=v1.0 MDFPQLPPTTPLSSIHIILLLTILSLAAIWRLLIVNRNSTHQHIKLPPGPLKLPIIGNMHQLLHPLAHRRLRDLAAEHGPIMHLNLGQVSTVVVSSPEMA KHVMKTHDVNFANRPFLLAPKVIFDGVDIAFSPYGEYWRQLRRVCTLELLSSSRVGSYRSIREQETASFVGEIASKQGSLINLTQMISSVTNSITSRAAF GNICRGKDEFISLAVKAIDIAGGFNLPDMFPSAKWLHIFSGVEGKLVKIREGTDRILQNIIDEHRAMPKNSDTNSNDLVDVLLMAQEDGQIEFPLPGDSC IKAVIMDIFTAGSETSSTVLGWTMAELLRNPRVYNKAQNEVRRVFKRSGMVKEEGVGELNYLKMVIKETMRLHPPVALLLPRENREDCKIEGYDIPAKTR VIVNAWAIGRDPKYWTEPERFWPERFVDVQMDYQGTDFAFIPFGAGRRICPGIAFGMANIELPLASLLFHFDWKTEDGSPLEDLDISESFGAAVTRKHDL CLIPVSSIIKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57260		CYP71B10	"cytochrome P450, family 71, s...		Lus10009903 [exp]	0	1

Compare expression of checked genes

Lus10009903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.