Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24840 1027 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024203 [exp] 1443 / 0 AT4G24840 1060 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G096100 [exp] 1113 / 0 AT4G24840 1041 / 0.0 unknown protein Potri.015G094000 [exp] 1071 / 0 AT4G24840 1018 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12022 [flax] [poplar] DUF3510 Domain of unknown function (DUF3510) CL0295 [flax] [poplar] Vps51 PF06148 [flax] [poplar] COG2 COG (conserved oligomeric Golgi) complex component, COG2
Representative CDS sequence Show only first row Show all	>Lus10009908 pacid=23150100 polypeptide=Lus10009908 locus=Lus10009908.g ID=Lus10009908.BGIv1.0 annot-version=v1.0 ATGGCGGATCCCATTCCCACTCAACCGCCACCAAGATCCGCTGCTGATCTCTTCGCTGAGCCACTTGATGGCCATCCTCTATGGTTCAAGCCCAACCTCT TCCTCGCCCCCAACTTTGACACCGAATCCTTCATCTCCGATCTCCGTACCTTTGTTCCCTTTGACACGCTTCGCTCGGAGCTTCAGAGCCACTTGGCTTC CCTCAACCACGAGCTGATCGACCTCATCAACCGCGACTACGCTGATTTCGTGAATCTCAGCACCAAGCTTGTCGATGTCGACGCCGCCGTCGTGCGGATG CGGGCTCCGCTTCTGGAGCTACGGGAGAAGATTGATGGATTCAGAGGCAGCGTCCAAAGTTCGCTTGTTTCTCTCAGAAACGGATTGCAGCAGAGATCGG AAGCTGCTACTGCTCGGGAGGTCTTGGAATTACTGTTGGACACGTTCCACGTTGTTTCTAAGGTTGAGAAACTGATTAAGGAACTACCAAGTGTTCCTTC TGATTTGTCGAATGGAGATGCAAATTTGATTGAGAAGAATTCTCTGATCAATGGCACTTATGTGCAACCAACTGAGAATGGAGCGACTCTTAGGGAAACA CAGAGCATGCTGCTGGAGAGAATTGCCAGCGAGATGAATCGACTGAAGTTCTACATTGCTCATGCACAGAATCTTCCTTTCATTGATAATATGGAAAAGA GGATTCAAAGTGCAAGTCAGTTACTGGATGCCAGTTTAGGACATTGTTTTGTTAACGGGCTGGAAAATCATGACGACAATGCCATTTACAATTGCCTACG TGCATATGCTGCCATTGACAATACCACAAGTGCTGAAGAGATATTCCGCACCACGATTGTAGCTCCATTAATTCATAAGATTATGATTATCCCACATGGA CAGTCAGCTGCAGGTGCCGGGGTTTCATCAGTTACACTTCAGACTGATTATCAGCAGATCAAGCAATGCATCGAGAAAGACTGTAAATTCCTCCTAGACA TTGCTTCTGCAGAAAATTCTGGGCTGCACGTTTTCAACTTCCTGGCCAACTCTATTCTGAAAGAAGTTCTTTCTGCAATTCAGAAGGGAAAGCCCGCTGC TTTCTCACCTGGTAGACCGTTGGAATTCCTAAGAAATTACAAATCAAGCTTAGATTTCTTGGTATATCTTGAAGGCTATTGTCCATCCAAAGCTGCTGCT ACAAAATTCAGAGCAGAAGCAGTATATGTTGAATTCATGAAACAATGGAATATTGGAGTTTATTTCTCCTTGAGATTTCAGGAGATAGCTGGTAATCTGG ATTCTGCCCTTGCAACAACAAGCCTTGTCCCAGCTACTCAGTCTGATGACATGATCACCCCAGAATTAACATTGAAACAGAGTGCTTCTCTTCTGCAGAG TCTGAGATCTTGTTGGAAGGAAGACGTTCTAATCATTTCTTGCTCCGACAAGTTTCTGCGCTTAACCTTGCAGCTTTTGTCAAGATATTCAAATTGGCTG ACATCTGGGCTGGCTGCTCGGAAGTCTGGTGGTGCAGTGCCACAACCTGGATCTGAATGGGCAACTTCAGCTGTCCTCGATGATTTTGTCTATGTGATCC ACGACATTAAGAATCTGAGCACAGAGGTTTGCGGGAGTTACCTTGAGCATATTGTGAAAACTTTATCTTGCTGTTCCACAGATGTCATTGATCTCGTAAG GAAAAGCATTGCGCAAGGTGGAAAATCTTTAGATGATTTAGCACCGCTAGTGATAACGGCTGTTATAGACACCCTGAAGGATAAGGCTGAAGAGGACCTG AAACAATTGAAGGGGATTACTGCAACATACAGGATGACAAATAAGCCCCTTCCGGTCAGACATTCCCCTTATGTGTCAGGGCTCCTGCGTCCATTAAAGG AATTTATGCAAGGGGAGAGAGCTACGAGTTACCTGTCAGAGGAAGCTAGGAAAGAAATACTCATTGGTACTGCAACTACAATTACCGACTGCTATAGCAA ATTAGCTACTGAACTCGTTAGTCTGGCAAGGAAAACAGAGTCATCGCTGCAGAAAATAAGGCAGGGGGCGCAAAGACGTGCAGGGACAAGCTCAGATGTG GTGGACAACAGCGTATCCGACACTGACAAAATATGCATGCAGTTGTTCTTGGACATTCAGGAATATGGACGCAATCTTGGAGGCCTCGGGGTGAATGCAG CCGATATCCCTTCCTATCGTTCATTCTGGGAATGCGTTGCTCCTCCAAGTAGGCAAAGCGTGATTGATTAG
AA sequence Show only first row Show all	>Lus10009908 pacid=23150100 polypeptide=Lus10009908 locus=Lus10009908.g ID=Lus10009908.BGIv1.0 annot-version=v1.0 MADPIPTQPPPRSAADLFAEPLDGHPLWFKPNLFLAPNFDTESFISDLRTFVPFDTLRSELQSHLASLNHELIDLINRDYADFVNLSTKLVDVDAAVVRM RAPLLELREKIDGFRGSVQSSLVSLRNGLQQRSEAATAREVLELLLDTFHVVSKVEKLIKELPSVPSDLSNGDANLIEKNSLINGTYVQPTENGATLRET QSMLLERIASEMNRLKFYIAHAQNLPFIDNMEKRIQSASQLLDASLGHCFVNGLENHDDNAIYNCLRAYAAIDNTTSAEEIFRTTIVAPLIHKIMIIPHG QSAAGAGVSSVTLQTDYQQIKQCIEKDCKFLLDIASAENSGLHVFNFLANSILKEVLSAIQKGKPAAFSPGRPLEFLRNYKSSLDFLVYLEGYCPSKAAA TKFRAEAVYVEFMKQWNIGVYFSLRFQEIAGNLDSALATTSLVPATQSDDMITPELTLKQSASLLQSLRSCWKEDVLIISCSDKFLRLTLQLLSRYSNWL TSGLAARKSGGAVPQPGSEWATSAVLDDFVYVIHDIKNLSTEVCGSYLEHIVKTLSCCSTDVIDLVRKSIAQGGKSLDDLAPLVITAVIDTLKDKAEEDL KQLKGITATYRMTNKPLPVRHSPYVSGLLRPLKEFMQGERATSYLSEEARKEILIGTATTITDCYSKLATELVSLARKTESSLQKIRQGAQRRAGTSSDV VDNSVSDTDKICMQLFLDIQEYGRNLGGLGVNAADIPSYRSFWECVAPPSRQSVID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24840			unknown protein		Lus10009908 [exp]	0	1
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10038564 [exp]	1.0	0.9410
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007887 [exp]	2.0	0.9377
AT5G11040		AtTRS120	TRS120 (.1)		Lus10008127 [exp]	2.4	0.9293
AT3G58640			Mitogen activated protein kina...		Lus10017649 [exp]	2.8	0.9166
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	3.5	0.9113
AT5G11490			adaptin family protein (.1.2)		Lus10011675 [exp]	5.3	0.8997
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028093 [exp]	5.7	0.8933
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10036156 [exp]	5.9	0.9150
AT5G53480			ARM repeat superfamily protein...		Lus10008863 [exp]	7.3	0.8885
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10029025 [exp]	8.1	0.8664

Compare expression of checked genes

Lus10009908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.