Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40660 395 / 2e-138 ATP12 protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024202 [exp] 499 / 1e-179 AT5G40660 351 / 2e-121 ATP12 protein-related (.1) Lus10000142 [exp] 109 / 6e-30 AT5G40660 110 / 6e-31 ATP12 protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G338200 [exp] 425 / 4e-150 AT5G40660 303 / 4e-102 ATP12 protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07542 [flax] [poplar] ATP12 ATP12 chaperone protein
Representative CDS sequence Show only first row Show all	>Lus10009910 pacid=23150112 polypeptide=Lus10009910 locus=Lus10009910.g ID=Lus10009910.BGIv1.0 annot-version=v1.0 ATGGCAGCTTTCTTTTTTAACCGAACACGGAACTTGTTAAAAAGACCCAAGCAACTAGCTCCACTGCCCACGTCACTTTTCGGCCGTCACTTCAACTCAA CAGCCGCCGCCCATCAGTCGCCGGATCCGGAAGGACAGTCTACTACCTCGTCTTCTTTCACTTTTGGGGAAAGCGACAATATTCTCGTCAAGGGCCCGAG GGATGGTGGTGTGTCGTCGTCGGTGACGATGCCGATGTCGTTTATGACGGGGTCGATAGTAGGGAAGCGATTCTACAAGCAAGTGACGACCAGGCAGGCT GACGACGGTAATGGTTGGACGGTGATGCTTGATTACAGGACGCTCAAGACTCCTTCCAAAAGGGCTCTGAAGCTGCCCAATCTGTCTCTTGCCAAAGCAA TTGCTGCTGAGTGGGATTTCCAGCAAACAGATGGAATCAGACCATTCACAATGCCCCTGATGAGGCTTGCTTGTACTGCGTTGGAAAGGGTTCCAATTAC CCGTCCTAAGATTATAGAAAGCTTGATGAACAAATTCAACCAGGACTTGGTTTTCTGTCGTGTTCCTTGGGATAATAATCTAACCAGTGACGTCTATGAT CGGCAGGTGGATAAAATCGATCCTTTGCTTGAATGGGTGAAGTCAGAATTTGGGTTTAAGCCAGCTGTCTACTCCAGTTTCTTTGGTGGGAAGCAGGACG AAGGTCTAATGAAAGCCATGGAAAACCTTCTCAAAGCTACGACTGATTGTGAACTGGCAGCGCTGGATGCGCTTGCATCTGCAGCACATTCGTTAGTAAT CGGTGTTGGGATATTCCGTGGGAAGTTGGACATTGACGAAGCAATCGAGCTGATTAGACTGGAAGAAGATGTGCAGGTTGACAAATGGGGTTTAGTTGAA GGAGGACATGATTTGGATATTGCTGATCTGAAGGTACAAATATCATCGGCTGCAGTGTTCCTTGGCCTTTCGCAGTTTTGA
AA sequence Show only first row Show all	>Lus10009910 pacid=23150112 polypeptide=Lus10009910 locus=Lus10009910.g ID=Lus10009910.BGIv1.0 annot-version=v1.0 MAAFFFNRTRNLLKRPKQLAPLPTSLFGRHFNSTAAAHQSPDPEGQSTTSSSFTFGESDNILVKGPRDGGVSSSVTMPMSFMTGSIVGKRFYKQVTTRQA DDGNGWTVMLDYRTLKTPSKRALKLPNLSLAKAIAAEWDFQQTDGIRPFTMPLMRLACTALERVPITRPKIIESLMNKFNQDLVFCRVPWDNNLTSDVYD RQVDKIDPLLEWVKSEFGFKPAVYSSFFGGKQDEGLMKAMENLLKATTDCELAALDALASAAHSLVIGVGIFRGKLDIDEAIELIRLEEDVQVDKWGLVE GGHDLDIADLKVQISSAAVFLGLSQF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40660			ATP12 protein-related (.1)		Lus10009910 [exp]	0	1
AT4G35490		MRPL11	mitochondrial ribosomal protei...		Lus10031045 [exp]	3.2	0.9331
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031764 [exp]	7.3	0.8997
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10012574 [exp]	8.2	0.9011
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10004617 [exp]	8.5	0.9256
AT2G32380			Transmembrane protein 97, pred...		Lus10027174 [exp]	10.4	0.9109
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007620 [exp]	10.4	0.9037
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10033723 [exp]	12.0	0.9055
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	13.6	0.9087
AT4G35490		MRPL11	mitochondrial ribosomal protei...		Lus10035432 [exp]	14.4	0.9018
AT5G08680			ATP synthase alpha/beta family...		Lus10035263 [exp]	14.5	0.9133

Compare expression of checked genes

Lus10009910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.