Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15720 64 / 1e-10 MYB TRFL5 TRF-like 5 (.1) AT5G58340 52 / 4e-07 MYB myb-like HTH transcriptional regulator family protein (.1.2) AT1G06910 44 / 0.0002 MYB TRFL7 TRF-like 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024200 [exp] 828 / 0 AT1G15720 65 / 5e-11 TRF-like 5 (.1) Lus10042209 [exp] 351 / 4e-116 AT1G15720 70 / 1e-12 TRF-like 5 (.1) Lus10008606 [exp] 256 / 2e-79 AT5G59320 84 / 3e-19 lipid transfer protein 3 (.1) Lus10020771 [exp] 120 / 9e-29 AT5G58340 70 / 1e-12 myb-like HTH transcriptional regulator family protein (.1.2) Lus10017320 [exp] 99 / 9e-22 AT5G58340 76 / 8e-14 myb-like HTH transcriptional regulator family protein (.1.2) Lus10001494 [exp] 75 / 6e-14 ND 40 / 0.004
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154500 [exp] 112 / 4e-26 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009912 pacid=23150092 polypeptide=Lus10009912 locus=Lus10009912.g ID=Lus10009912.BGIv1.0 annot-version=v1.0 ATGTCTCCAGCATGCCACCCGGACAAAGATATCTCGAGGTGGATTTCGGAGTTCCTAATCCGGCAACCAATTCCAGGTTTTCTCGTCGAAAGCGTCATCT CCAGTTTGGAAGCTTTAGTCGTCGACAGTGATTGGCGCTTAAAAAAGAAGCGGATTCTCAACTCGATCCAGCAAGAAATCTCTAAGAAGGGTTCTCTCTC CGAAAAGATGCTCGAATTGTTGGAAACCGTTGAGAAGTTCGACCGAGAAAACGGGATTACAATAACGGAGACGATGAAAGCAGCGTATGCAGCATTGGCG CTGGAATGCACTCTCGAAGAGTTCAGCTTCGAGGTACTTGAGCGCATTTGGAGAGGAAGAGTTCAGAATTTGGAGAAGGCGCAGGAAAGCGAGCTGGTTA CGGACGAATTGCGGAAGTGTTGGGACGACGTGGAGGCTGCTGCTTGGAATCTGGATGTCCGCTATAGGCTGTTGGAATCTACTAAGCGGAAGGATGCATT ACGTCTTGTTGAGGCTTATTTAGAAGAGGCGATGATGGGAAATGATGATGAACCTTCATTTCTGGAGCTTGCAGCTAGAAGGGAGAAGGAGCTGGAAGAA AATGCAAAGTACAGACATGATGAGAATAATAAAGATGCTGATATCAGGCAGGATTTGGGTGCTGAAGGTGGGATGAAAACTGGATTGGAGCAAGTTCCTG ATAGCGATAGACAACCAGTTTCCGTATCATCTCCAGCTGCTGAAACAAAGAAGGGGTATCGTAGAGTAAAATGTGTTCCTTCTCGCAAACACCCAACAAG GAAAGGTAGGTCTACTGGGAACATTCCCTCTAGCAAGTATGATGCGTTGCCTACTTCTGAAGTTAAGCAAGTAAAAGATGCACTCCATTCCAGTTCCATC GAGTTACAAGCCGTGGTGAAGGATCCACTTCCTGATGCTTTGCATAGCTCCGAGCTGGTAATTGTTGTACCCCAACAAGATGTCTGCAACAAAGAGGCAT TGGTGGAGAATCGTAATGGGGAGAATCTGGGTGCTTCTGATCCATCTGCTGATGCCATAATGTCTGAGTTGAACAGCAAAGGTTTAAATCCCGATGTTCA TGCAGAACAAAGTAAAGGAATAGGCGAGGATAGCCCCACTCCCTCCAATTTACCGGATCCGGGATGCATGAGGACTGATGAGAGTAACAAAGCTATTCGT TCATCTGAACGTCTCAAAGTTTCAAAACCCGCCTTGATGGCAAGGAATAGTACAGCTTGTACACACGAGTGGGATGATTCACTTGGCAGCTCGTCTGAAG GAACATCTAATGGTACTAGAAGAAATGAAATAAAAAGGCCAAGGAGAGAATTACATCCGTCATCGAAAGACGATAGCACCCACATTTCGCCTAGGAGAAA AAGGAGAAGATGGAGTGCTGAAGAGGAAGACGCCTTGAGGGAGGGTGTCTATGCGTACGGCTCGTTTCATCTTTCTTGTTTCTTCATCGCTCGTTAA
AA sequence Show only first row Show all	>Lus10009912 pacid=23150092 polypeptide=Lus10009912 locus=Lus10009912.g ID=Lus10009912.BGIv1.0 annot-version=v1.0 MSPACHPDKDISRWISEFLIRQPIPGFLVESVISSLEALVVDSDWRLKKKRILNSIQQEISKKGSLSEKMLELLETVEKFDRENGITITETMKAAYAALA LECTLEEFSFEVLERIWRGRVQNLEKAQESELVTDELRKCWDDVEAAAWNLDVRYRLLESTKRKDALRLVEAYLEEAMMGNDDEPSFLELAARREKELEE NAKYRHDENNKDADIRQDLGAEGGMKTGLEQVPDSDRQPVSVSSPAAETKKGYRRVKCVPSRKHPTRKGRSTGNIPSSKYDALPTSEVKQVKDALHSSSI ELQAVVKDPLPDALHSSELVIVVPQQDVCNKEALVENRNGENLGASDPSADAIMSELNSKGLNPDVHAEQSKGIGEDSPTPSNLPDPGCMRTDESNKAIR SSERLKVSKPALMARNSTACTHEWDDSLGSSSEGTSNGTRRNEIKRPRRELHPSSKDDSTHISPRRKRRRWSAEEEDALREGVYAYGSFHLSCFFIAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15720	MYB	TRFL5	TRF-like 5 (.1)		Lus10009912 [exp]	0	1
AT4G21100		DDB1B	damaged DNA binding protein 1B...		Lus10020922 [exp]	2.2	0.8760
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037517 [exp]	5.1	0.8675
AT3G14750			unknown protein		Lus10038143 [exp]	5.5	0.8628
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10020235 [exp]	8.7	0.8619
AT5G61450			P-loop containing nucleoside t...		Lus10031163 [exp]	10.4	0.8274
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	10.5	0.8532
AT1G34150			Pseudouridine synthase family ...		Lus10023799 [exp]	13.1	0.8329
AT4G17616			Pentatricopeptide repeat (PPR)...		Lus10037275 [exp]	15.4	0.8393
AT1G21760		ATFBP7	F-box protein 7 (.1)		Lus10029676 [exp]	16.2	0.8098
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10033685 [exp]	16.5	0.8360

Compare expression of checked genes

Lus10009912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.