Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09040 1113 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 493 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 477 / 6e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02330 467 / 2e-149 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53360 458 / 2e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 449 / 1e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 447 / 4e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 447 / 2e-141 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G39530 436 / 2e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 435 / 3e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024199 [exp] 1891 / 0 AT3G09040 1017 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 491 / 2e-156 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 472 / 9e-152 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032091 [exp] 469 / 1e-151 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 458 / 1e-147 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028855 [exp] 464 / 2e-144 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 456 / 2e-144 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 452 / 3e-143 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 449 / 5e-142 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G187800 [exp] 1380 / 0 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 540 / 2e-177 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 512 / 1e-164 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G129100 [exp] 485 / 5e-154 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 483 / 5e-154 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 477 / 1e-152 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G068600 [exp] 476 / 3e-151 AT1G16480 1183 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G018700 [exp] 464 / 2e-148 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 455 / 4e-146 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.011G156800 [exp] 451 / 5e-144 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10009913 pacid=23150140 polypeptide=Lus10009913 locus=Lus10009913.g ID=Lus10009913.BGIv1.0 annot-version=v1.0 ATGTATTGCAGTCGCCAACACTTCTGCAGAACGTCCCCTGCCTTGCACGCTCGTTACTTTTCCGGCCGAATCACCTCCTCAGCTTCTCCACTCAATCCAT CCTACACATATGACCAGCTGTTAGAAGCCTGCCTTCTACAATGCAAGAAAGTCAAAGCCCACCACCCGTTCGACCAAACTCCTCACAGAGTTTCTGCGAT TTCAACAACCGGGAAACTCGTTCACAGCTACGCTATCAAGTTAGGGGTTTCGACAGAAAAGTTCCTCGGAAACGCCATTCTCGATCTCTATACCAAGTGT GGCAATGTCGAATTCGCGGAGAAAGCGTTTGACAGGTTTGAGAATAGAGATGTGTTGGCTTGGAATTCTATTCTATCACTGCATTTGAAAAGGTCATCGA CATGCTCAGTTTTGAGATCTTTTGGGCTGTTATGGAACGAAGGGGTTCGTCCAAATGAGTACACTTTTGCTATTGCGTTGTCTGCTTGTGCAAGGCTGGG CAATGAGGAATGTGGTAGACAAGTTCACAGCAATCTAGTAAAGATGGGGTTGGAATCGAGTTCTTTCTCCCAGGGTGCCCTCATTGATATGTATGCTAAG AGTAATCAAATGACGCAAGCTCGAAAAGTTTTTGATGCAGCGGGCAAAATGGATACAGTTTCTTGGACTTCATTGATTGCTGGCTACGTGCAAGCTGGTT TACCTGGAGAGGCAATACAAAGTTTCGAAGAGATGCGAAAAGATGGAATGGAGCCTGACCAAGTGGCACTCATCACGGTTATGAATGCATATCTTAGTTT GGGAAAGCTTGATGATGCTTCTGGGTTGTTCTTCCAGATGTCAAACCCAAATGTTGTAGCTTGGAATGTGATTATGTCAGGGTATGCTAAGCAAGGATAC GAGGCTGAAGCTCTAGAATTGTTTCAAAAGATGAGAAGATCTGGTGTCAAACCCACTAGGTCAACATTAGGAAGCATATTAAGTGTAATCGGTAACATGG CTACTCTTGAACATGGTTTGCTACTTCAGGCGGAGGCAATGAAATTGGGACTGTATTCTAATGTCTATGTTGGAAGTTCTCTGATTAGTATGTATGGGAA GTGTGCGAAACCGGAAGCAGCTAAGAAAGTATTTGATGATCTACAAGTGAAAAATCTTGTCTTGTGGAATTCAATGCTCGGAAGTTTTGCCCAAAATGGC TATCCTTATGAAGTGGTGGACTTGTTCTTTAACATGAAGAGCTATGGATTTCACCCGGATGATTTTACATTTACCAGCATTCTGAGTGCTTGTGCTTGCC TCCAATTTCTAGAGGTGGGTCGACAGTTACATTCTGTCATTATAAAGAACAAACTAGCATCAAATTTATTTGTGGGAAATGCATTGATAGACATGTACGC TAAAGCTGGGAATCTTCAAGATGCAAGGCAGCAATTTGAGCTGGTCAAGAATAGAGATAACATCTCTTGGAATGCAATCATTGTTGGATACGTACAGGAA GAAAATGAAGATGAAGCATTTAGGTTATTTCAGCTGATGAACGTGAATAACATTCTACCAGATGAGGTCTCCCTCGCAAGTATTCTTAGTGCTTGTGCAA GTGTCAAAGGGATCGAACAAGGCAAACAGGTGCACTGTCTCTCAGTGAAAAATGGTCTGGAAACAGGTCTATATGCCGGAAGCTCCCTTATTGACATGTA TGTGAAGTGTGAGAATATAGAGTCTGCTGACAAGATTCTTGCTTGCTTGCCTAAATGGAGTGTTGTCTCTATCAATGCATTGATTGCAGGATATGCTTCA TGTAATATAGAGAAGGCAATTCTCTTGTTTCGTAACATGCAAGCTGAAGGACTGAAGCCCTCCGAAGTAACTTTTGCAACCATTTTGGAGGCATGTGATG GACCAGAAAAAATATATCTGGGTGTTCAAATCCACTGTCTTGTATTTAAGACAGGCCTTCCGCTGGATGATGAATATTTGGCCGTCTCTCTTGTTAGCAT GTACATGAGTGCTCTAAGGAAAAACGATGCTATTCTTCTATTCTCAGAACTCTCCAACCTAAGAAGTACTGTCTTCTGGACTACCATGATTTCCGGACTT ACACAAAACGACTGTAGCGAGGAGGCTCTACGATTCTACCAAAAAATGCATGGTTCCGATGTCTTGCCTGATCAAGCAGTATTTGTCAGCGTCCTTAAAG CATGTGCGCTCCTATCATCTGTGAGAGATGGTACTATGATCCATGCTCTTATTTGCCGAACCGGTCTTGATTCAGATGAATTGACTTGTAGTGCTCTTGT CGACATGTATGCTAAATGTGGGAATGTGGAGAGTTCAATGCAAGTCTTTGAGGAACTTGGTAATAAAGAAAATGTCATTTCTTGGAACTCTATGATAGTC GGATTTGCTAAAAATGGTTATGCTGAAGATGCCTTGAGAGTATTCTGGGAGATGAAGGATATGAATGTTAAACCTGACGAGATCACGTTTCTTTGTGTCC TTACTGCTTGTAACCATGCAGGAATGGTTCCTGAAGGTCGTCATATCTTCGACATGATGGTCAGCCATTACGGGATTCAGCCTAGAATTGACCACTGTGC CTGCATGGTTGATCTTCTAGGCAGATGGGGGTTTCTTGAAGAAGCTGAAGACTTCATAAGCAAACTCAACTTGGAATCTGATGCCAAGATTTGGGCTACG ATGCTTGCAGCTTGCAGAACACATGGGGATGAAAAGAGGGGACAACAAGCCGCTGAGAAGCTCATTCAGCTTGACCCCCAAAATTCATCGCCCTATGTGC TTCTTTCTAACATTCACGCAGCATCTGGGAATTGGGAGGAGGTTATGACTTTGAGGAGATCAATGAAAGAGAAAGGATTAAAGAAGTTGCCGGGGTGTAG CTGGATTACTGTAGGAAAAACCACAGACTTCTTCGTTGCAGGAGAGATCTCTCATCCTAGTGCAGATGGTATTGGCTTGCTTTTGAAAGATTTAACGGCA TTGATGAAAGACGTATACTTTTCTCCAATTGATTTCCTTTACGACGTTGAAGACTAA
AA sequence Show only first row Show all	>Lus10009913 pacid=23150140 polypeptide=Lus10009913 locus=Lus10009913.g ID=Lus10009913.BGIv1.0 annot-version=v1.0 MYCSRQHFCRTSPALHARYFSGRITSSASPLNPSYTYDQLLEACLLQCKKVKAHHPFDQTPHRVSAISTTGKLVHSYAIKLGVSTEKFLGNAILDLYTKC GNVEFAEKAFDRFENRDVLAWNSILSLHLKRSSTCSVLRSFGLLWNEGVRPNEYTFAIALSACARLGNEECGRQVHSNLVKMGLESSSFSQGALIDMYAK SNQMTQARKVFDAAGKMDTVSWTSLIAGYVQAGLPGEAIQSFEEMRKDGMEPDQVALITVMNAYLSLGKLDDASGLFFQMSNPNVVAWNVIMSGYAKQGY EAEALELFQKMRRSGVKPTRSTLGSILSVIGNMATLEHGLLLQAEAMKLGLYSNVYVGSSLISMYGKCAKPEAAKKVFDDLQVKNLVLWNSMLGSFAQNG YPYEVVDLFFNMKSYGFHPDDFTFTSILSACACLQFLEVGRQLHSVIIKNKLASNLFVGNALIDMYAKAGNLQDARQQFELVKNRDNISWNAIIVGYVQE ENEDEAFRLFQLMNVNNILPDEVSLASILSACASVKGIEQGKQVHCLSVKNGLETGLYAGSSLIDMYVKCENIESADKILACLPKWSVVSINALIAGYAS CNIEKAILLFRNMQAEGLKPSEVTFATILEACDGPEKIYLGVQIHCLVFKTGLPLDDEYLAVSLVSMYMSALRKNDAILLFSELSNLRSTVFWTTMISGL TQNDCSEEALRFYQKMHGSDVLPDQAVFVSVLKACALLSSVRDGTMIHALICRTGLDSDELTCSALVDMYAKCGNVESSMQVFEELGNKENVISWNSMIV GFAKNGYAEDALRVFWEMKDMNVKPDEITFLCVLTACNHAGMVPEGRHIFDMMVSHYGIQPRIDHCACMVDLLGRWGFLEEAEDFISKLNLESDAKIWAT MLAACRTHGDEKRGQQAAEKLIQLDPQNSSPYVLLSNIHAASGNWEEVMTLRRSMKEKGLKKLPGCSWITVGKTTDFFVAGEISHPSADGIGLLLKDLTA LMKDVYFSPIDFLYDVED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09040			Pentatricopeptide repeat (PPR)...		Lus10009913 [exp]	0	1
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Lus10028296 [exp]	4.0	0.8934
AT5G64420			DNA polymerase V family (.1)		Lus10037435 [exp]	5.5	0.9047
AT1G73930			unknown protein		Lus10032474 [exp]	6.2	0.8902
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10037788 [exp]	8.9	0.8782
AT5G07900			Mitochondrial transcription te...		Lus10040462 [exp]	12.3	0.8011
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10033331 [exp]	17.7	0.8763
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10004706 [exp]	18.8	0.8573
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10023443 [exp]	22.4	0.8764
AT3G01810			unknown protein		Lus10041590 [exp]	23.3	0.8436
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10023360 [exp]	23.7	0.8728

Compare expression of checked genes

Lus10009913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.