Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34980 355 / 4e-123 SETH1 phosphatidylinositolglycan synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024198 [exp] 473 / 8e-170 AT2G34980 380 / 2e-133 phosphatidylinositolglycan synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G074300 [exp] 403 / 2e-142 AT2G34980 383 / 2e-134 phosphatidylinositolglycan synthase family protein (.1) Potri.001G160600 [exp] 400 / 5e-141 AT2G34980 357 / 5e-124 phosphatidylinositolglycan synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06432 [flax] [poplar] GPI2 Phosphatidylinositol N-acetylglucosaminyltransferase
Representative CDS sequence Show only first row Show all	>Lus10009915 pacid=23150110 polypeptide=Lus10009915 locus=Lus10009915.g ID=Lus10009915.BGIv1.0 annot-version=v1.0 ATGGTTGTGGGGGTCAGCGATTCTTCTCCTCGGCTCGGTAAGTGGAGGAAAGTAGCGTATGGGGGAATGCAGCCTGGTTTTGATGACAACCACACTGACG AGTCCTTCCTCGAAGACATGGTCATGAATGCCAACGTGGTGAAAAGGGACATAAAGAAGGTTATGTTAGACTCCGTTTCCATCTCTCAGTATCTGTGCAT TGTTTCCCTTGTTGTCTTGGTATGGACCTACACCCTTCAGTCAACCCTAGACGAGTATTCCCTCTTACTTCTCGACCTCGGTCTTCTTTGTTCCGGTTTC CTTGTCCTGCTACTAACCAAAGAGATGGACTCCCTCAGTCTTTTTTCCCACTATCTCCTCAACATAGGTTTCTTCACCACCGGATTATATGTTCTATCGC CTATCTACAACACTCTGACCAGGTCCATTAGCTCGGACACGATCTGGGCTGTGACTGTTTCTCTTGTTGTTCTTCACCTCTTCCTCCATGACTATTCAGG ATCCCCTGTAGGGGCTCCAGGAGCCTTGAAAAAGGCTTCTCCAAGCTTGATCAGTTGTGTGAGCTTGAATGCTTCGGTGGTTGCTTCGGTTTTTATTGCC TCCCGCCTCCCTTCGAGGGTTCATGTGTTTGCAGTCATGCTCTTCTCTATGCAAGTCTTCCTTTTCGCTCCATTCGTAACTTACTGTATCAAGAAATGTT CTTTCACCTTGCATCTTGTGTTCTCGTTTGGGTTAATGGCCTTGACGCTAGGGTTTGTCTTCACGCTTCACAAGCTACTGTTTGTAGTGTTATTGGGTTT GTTGGTATTCGTTAGTGTTGTCTGTCCGTATTGGCTAATACGAATCCAGGAATACAAGTTTGAGATCAATGGTCCTTGGGATGAAGCTAAGCTTTGTTTT GACATTAGGGATTGA
AA sequence Show only first row Show all	>Lus10009915 pacid=23150110 polypeptide=Lus10009915 locus=Lus10009915.g ID=Lus10009915.BGIv1.0 annot-version=v1.0 MVVGVSDSSPRLGKWRKVAYGGMQPGFDDNHTDESFLEDMVMNANVVKRDIKKVMLDSVSISQYLCIVSLVVLVWTYTLQSTLDEYSLLLLDLGLLCSGF LVLLLTKEMDSLSLFSHYLLNIGFFTTGLYVLSPIYNTLTRSISSDTIWAVTVSLVVLHLFLHDYSGSPVGAPGALKKASPSLISCVSLNASVVASVFIA SRLPSRVHVFAVMLFSMQVFLFAPFVTYCIKKCSFTLHLVFSFGLMALTLGFVFTLHKLLFVVLLGLLVFVSVVCPYWLIRIQEYKFEINGPWDEAKLCF DIRD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34980		SETH1	phosphatidylinositolglycan syn...		Lus10009915 [exp]	0	1
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10033122 [exp]	3.7	0.7955
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10043349 [exp]	4.0	0.8203
AT3G16270			ENTH/VHS family protein (.1)		Lus10025811 [exp]	5.7	0.7945
AT1G20575		DPMS1	dolichol phosphate mannose syn...		Lus10030748 [exp]	11.5	0.8328
AT1G47830			SNARE-like superfamily protein...		Lus10024337 [exp]	12.0	0.7806
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10017555 [exp]	18.1	0.7654
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Lus10014641 [exp]	19.4	0.7983
AT3G05940			Protein of unknown function (D...		Lus10001426 [exp]	21.0	0.7908
AT4G33380			unknown protein		Lus10009765 [exp]	22.5	0.8016
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Lus10016613 [exp]	28.0	0.7594

Compare expression of checked genes

Lus10009915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.