Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40610 315 / 5e-109 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT1G69530 306 / 7e-106 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT1G26770 305 / 2e-105 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT2G39700 297 / 5e-102 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT5G05290 296 / 1e-101 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G03090 295 / 2e-101 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT3G55500 289 / 1e-98 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT5G02260 286 / 1e-97 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT2G37640 286 / 1e-97 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT5G56320 285 / 3e-97 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008603 [exp] 346 / 3e-121 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10042214 [exp] 335 / 5e-117 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10034227 [exp] 327 / 5e-114 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10029038 [exp] 306 / 8e-106 AT2G40610 418 / 6e-150 expansin A8 (.1) Lus10040286 [exp] 299 / 1e-102 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10023407 [exp] 298 / 4e-102 AT2G39700 445 / 3e-160 expansin A4 (.1) Lus10036763 [exp] 296 / 1e-101 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10026614 [exp] 295 / 5e-101 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 293 / 2e-100 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154700 [exp] 336 / 1e-117 AT2G40610 348 / 2e-122 expansin A8 (.1) Potri.019G057500 [exp] 335 / 6e-117 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.016G135200 [exp] 326 / 1e-113 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 323 / 3e-112 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.008G088300 [exp] 306 / 1e-105 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.004G123200 [exp] 305 / 3e-105 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.010G167200 [exp] 303 / 2e-104 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.017G085300 [exp] 302 / 2e-104 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) Potri.013G060800 [exp] 297 / 4e-102 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.001G001100 [exp] 296 / 6e-102 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10009917 pacid=23150113 polypeptide=Lus10009917 locus=Lus10009917.g ID=Lus10009917.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTGCAACCTTATTCTCGTTCTTCTCATCCCTGCTATTAGCTTCATCCATGTTTGATCACATTTACGCCGATTACGGCGGGTGGCAGTCAG CTCACGCTACCTTCTATGGGGGCGGAGACGCCTCCGGCACCATTGGAGGAGCTTGTGGATATGGAAATTTGTACAGCCAAGGGTACGGGACGAACACGGC GGCATTGAGCACGGCGCTGTTCAATAACGGGTTTAGCTGCGGTGCTTGTTTCGAGATCAGGTGCGTCAACGACCCAAGTTGGTGTCTCTCGCCGTCAATC GTTGTAACGGCAACCAATTTTTGCCCGCCGAACCCAGCCCTCCCAAACAACAACGGCGGCTGGTGCAACCCTCCCTTGCAACACTTTGACTTGGCTCAAC CTGCTTTCCTCCAGATTGCCCGTTACCGCGCTGGCATCGTACCCATTTCTTTCCGCAGGGTGCCATGCTGGAAAAAGGGAGGGATAAGGTTCACGATCAA CGGGCACTCCTACTTCAACCTAGTACTAGTAACCAACGTGGGAGGGGCAGGGGATGTTCATGCGGTTGCCGTCAAAGGGTCAAAAACCGGATGGCAGTCA ATGTCAAGAAACTGGGGACAGAACTGGCAAAGCAATGCTTATCTCAACGAACAGAGCTTGACGTTCGCCGTCACGACCAGCGACGGCCGAACTGTCAATA GCTACAACGTTGTGCCGGCCGGTTGGCAGTTTGGTCAGACATTCCAAGGTAGCCAATTTTAG
AA sequence Show only first row Show all	>Lus10009917 pacid=23150113 polypeptide=Lus10009917 locus=Lus10009917.g ID=Lus10009917.BGIv1.0 annot-version=v1.0 MAAAATLFSFFSSLLLASSMFDHIYADYGGWQSAHATFYGGGDASGTIGGACGYGNLYSQGYGTNTAALSTALFNNGFSCGACFEIRCVNDPSWCLSPSI VVTATNFCPPNPALPNNNGGWCNPPLQHFDLAQPAFLQIARYRAGIVPISFRRVPCWKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKGSKTGWQS MSRNWGQNWQSNAYLNEQSLTFAVTTSDGRTVNSYNVVPAGWQFGQTFQGSQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10009917 [exp]	0	1
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10041341 [exp]	2.4	0.9154
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10037377 [exp]	3.0	0.9252
					Lus10026075 [exp]	6.6	0.8653
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036112 [exp]	7.1	0.9093
AT5G01660			unknown protein		Lus10002863 [exp]	8.7	0.8457
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002979 [exp]	8.7	0.9012
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002984 [exp]	9.5	0.8846
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036113 [exp]	10.5	0.8874
AT3G05610			Plant invertase/pectin methyle...		Lus10020909 [exp]	11.2	0.8770
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10035854 [exp]	14.5	0.8580

Compare expression of checked genes

Lus10009917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.