Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58370 473 / 7e-165 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G11480 109 / 1e-26 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G22870 100 / 1e-23 EMB2001 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011703 [exp] 104 / 9e-25 AT2G22870 427 / 5e-152 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10039653 [exp] 102 / 3e-24 AT2G22870 426 / 2e-151 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022126 [exp] 101 / 1e-23 AT5G11480 418 / 8e-148 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011673 [exp] 101 / 1e-23 AT5G11480 418 / 1e-147 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018881 [exp] 44 / 0.0002 AT3G07050 706 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10028574 [exp] 44 / 0.0003 AT3G07050 743 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G128000 [exp] 555 / 0 AT5G58370 461 / 1e-158 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G243200 [exp] 105 / 2e-25 AT5G11480 422 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G037000 [exp] 102 / 6e-24 AT5G11480 421 / 7e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G006300 [exp] 98 / 1e-22 AT2G22870 434 / 2e-154 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G007450 [exp] 49 / 2e-07 AT2G22870 131 / 3e-39 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10009919 pacid=23150077 polypeptide=Lus10009919 locus=Lus10009919.g ID=Lus10009919.BGIv1.0 annot-version=v1.0 ATGACTATGGAAGCAGTTTCAGTGTTTAAGCTTAAACCCAGACTGAAGCGTCCAACTAGGTTGAGAGATGGTTCAGTAAAAGGGAACAGTAGCAGTGGAC CTCCGCGGTCTATGTGGGTTTCTCGTAAAGAGGCTGGAAATTCAGGAAAGAGAGTTGCTGCTCTTAAAGATGAGGATGATGATGGAAGGCAACTCCGCGG TACTAAAAGGGCTAGTAAGTTTGACGAACGGGATGATGATAGAAGGCAACTCCGGGGTACTAAACGGACTAGTAAGTTTGACGAACGGGATAATGATCGA ACCGGCATACTGAAGAATCATAGTAAAGGCAAGGAATACGTGTTTGATCAAAGTAAAAGCAGAATCCATAATGCGTCTTCTCCGACTTATGCAAATAAAG GCGTGAGTAGTAGTAAAAGGAGCACACTTGATAAAGATTCAGACTTTCATCAGGATGGCCAACCGAGGAAGAAAAAATATTCTATTCGTCTGCATCGGTA CGATACTTCAAACAAGCGGATGGATGATGGACTGGACATCGATGAAACCACCAAAGCAAAGAAGAAGCAAATGGAGAAAGAAGCTGTAATGTCAAAGAAT GCTGCGTTTCGTGCGATTAAACCAAGTCCGTCCATCCTTTCCTTTGTGGAAGATAACATGTTGGGTCGACGTCGTTTGATCGACTTAAAAAGGGCTGGAT ACAACATTGAGCTGTCTGCTCCGCTCGATAATATCCCGCTTTCCAAAAGCACCGAGAGAGAACGGATTGAAGAAAATGTCTTCAGGAATAGGTTAACATT TTTTGCTGGTGCAAAGGTTTCCTCTTCATTCCCACCACCCAATCTTCCAGAGATTGCATTTGCTGGAAGGTCAAATGTTGGAAAGTCGTCTCTACTGAAT TCACTAACAAGACAATGGGGAGTTGCACGGACATCAGACAAACCTGGCCTCACTCAGACAATTAACTTCTTCGAGCTTGGAAAGTTGTGCTTGGTTGATT TGCCTGGATATGGCTTTGCATATGCGAAAGAAGAAGTTAAGGATTCCTGGGAAGAGCTTGTCAAGGAGTATGTATCAACAAGATCGGGTCTGAAACAAGT CTGTCTTCTCATTGACACAAAATGGGGAATGAAACCAAGAGACCGTGAACTCATCGATTTGATGGAAAGATCTAAAACAAAATACCAGATAGTATTAACC AAGACCGATCTGGTTTTCCCCATTGATGTAGCACGTCAGGCTATGCAAATCGAAGAGAGCCTCAGGGCAAACAAGTCTCTCGTACAACCTACGATGATGG TCAGTTCACAAACTGGAGCTGGCATCCGCACATTAAGAACAGTGCTCTCCAAGTTTGCCCGTTTCATTAAAGTATAA
AA sequence Show only first row Show all	>Lus10009919 pacid=23150077 polypeptide=Lus10009919 locus=Lus10009919.g ID=Lus10009919.BGIv1.0 annot-version=v1.0 MTMEAVSVFKLKPRLKRPTRLRDGSVKGNSSSGPPRSMWVSRKEAGNSGKRVAALKDEDDDGRQLRGTKRASKFDERDDDRRQLRGTKRTSKFDERDNDR TGILKNHSKGKEYVFDQSKSRIHNASSPTYANKGVSSSKRSTLDKDSDFHQDGQPRKKKYSIRLHRYDTSNKRMDDGLDIDETTKAKKKQMEKEAVMSKN AAFRAIKPSPSILSFVEDNMLGRRRLIDLKRAGYNIELSAPLDNIPLSKSTERERIEENVFRNRLTFFAGAKVSSSFPPPNLPEIAFAGRSNVGKSSLLN SLTRQWGVARTSDKPGLTQTINFFELGKLCLVDLPGYGFAYAKEEVKDSWEELVKEYVSTRSGLKQVCLLIDTKWGMKPRDRELIDLMERSKTKYQIVLT KTDLVFPIDVARQAMQIEESLRANKSLVQPTMMVSSQTGAGIRTLRTVLSKFARFIKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58370			P-loop containing nucleoside t...		Lus10009919 [exp]	0	1
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10014680 [exp]	1.4	0.9022
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10024919 [exp]	2.6	0.9128
AT1G20370			Pseudouridine synthase family ...		Lus10005641 [exp]	3.2	0.8909
AT2G31740			S-adenosyl-L-methionine-depend...		Lus10016656 [exp]	5.3	0.8916
AT1G75200			flavodoxin family protein / ra...		Lus10012082 [exp]	9.9	0.8841
AT2G42120		POLD2	DNA polymerase delta small sub...		Lus10016262 [exp]	10.5	0.8926
AT3G09720			P-loop containing nucleoside t...		Lus10026871 [exp]	10.6	0.8187
AT3G21540			transducin family protein / WD...		Lus10023903 [exp]	15.0	0.8588
AT1G76120			Pseudouridine synthase family ...		Lus10021231 [exp]	15.2	0.8584
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	15.5	0.8653

Compare expression of checked genes

Lus10009919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.