Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47860 613 / 0 Protein of unknown function (DUF1350) (.1) AT3G43540 129 / 2e-33 Protein of unknown function (DUF1350) (.1), Protein of unknown function (DUF1350) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024193 [exp] 821 / 0 AT5G47860 566 / 0.0 Protein of unknown function (DUF1350) (.1) Lus10042222 [exp] 666 / 0 AT5G47860 548 / 0.0 Protein of unknown function (DUF1350) (.1) Lus10008591 [exp] 597 / 0 AT5G47860 486 / 1e-171 Protein of unknown function (DUF1350) (.1) Lus10019508 [exp] 137 / 9e-35 AT1G80770 560 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043354 [exp] 107 / 1e-24 AT1G80770 550 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G072400 [exp] 649 / 0 AT5G47860 578 / 0.0 Protein of unknown function (DUF1350) (.1) Potri.003G158400 [exp] 642 / 0 AT5G47860 605 / 0.0 Protein of unknown function (DUF1350) (.1) Potri.006G217700 [exp] 138 / 2e-36 AT3G43540 494 / 4e-175 Protein of unknown function (DUF1350) (.1), Protein of unknown function (DUF1350) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07082 [flax] [poplar] DUF1350 Protein of unknown function (DUF1350)
Representative CDS sequence Show only first row Show all	>Lus10009920 pacid=23150090 polypeptide=Lus10009920 locus=Lus10009920.g ID=Lus10009920.BGIv1.0 annot-version=v1.0 ATGGCCAGTTGCTTGCGGAGCCATCAGCTAATGCTCCAGTCTCTCAATAACTTCACTACTGGCTTCTCCGATTACCCTCTTCTTCCTCCTTCCCATCGCC GCCACCGTTTCCGTCCCCTTGACTCCTTGCTTCACCGCCGTGCAACTACCACCAGAATTTGTTGCCAGTATGATGACACCGGAAGCAAACCATCTCAACC CTCCTCCTCTGGAATTCAAGTTTATGGTCAGATTGAGAGGATACTTACCGAGACGGTGCGGCAATCCCAGACTAGCTGGGGCTCTTCTGCTGACTGGACG GAAATCGAGGGAGCATGGGTTCTGAAACCAAGAAATGCAAAACCTACCTCAGTTGTCCATTTCATTGGCGGCATATTTGTTGGAGCAGCACCTCAACTAG CTTACCGTTTATTTCTTGAGCACCTTGCTGAAAAGGGTGCACTGGTGATTGCAACACCTTATGCTAGTGGGTTTGACTATTTCCACATAGCAGATGAAGT TCAATTTAAATACGATAGAGTCATCCGATTTCTACAAGAATCTGTGCAAGATCTTCCAACCTTTGGAATCGGTCACTCTTTGGGATCTGTCATTCACCTT CTGATTGGTTCACGTTATGCTGTTCAAAGAAGCGGGAATGTACTTATGTCGTTCAATAATAAGGAAGCAAGCTTGGCTGTCCCTCTATTCTCGCCTGTTC TTCTACCAATGGCTCAAAGCATTGGCCCAATTTTATCGCAGATAGCCTCATCACCAACAGTCCGCATGGGGGCTGAAATGACATTGAAGCAGATAGAGAG CCTGACTCCTCCATTCATGAAACAAGCTTTCCCTTTAATTGAGCAGCTTCCCCCTCTATACATGGACTTGGTTAATGGAAGAGAAGAGTTCAGTCCAAAA CCTGAAGAGACTCGTCGGCTTATAAAGTCATACTATGGCGTCTCTAGGAACCTCTTAGTAAAATTCAAGGATGATTCTATTGACGAGACCATGTCACTAG CTCAAGTCCTCAGTTCAGAATCAGCCATTAGCTCCATGTTAGACATGTCCATTCGTTCATTACCCGGAGATCATGCTCTTCCCCTGCAACAGGCCATCCC GGATGTCCCGCCTGCTATGGCAAGTGCAGTAAACCGAGGGAGCGAGCTGTTCACGAATCTGACTGCTGGGACACCTTGGGAGACTGTGGCTAAAGAAGTT GGTAATACGTTAGGAACAGACAACCGGATCCTACGTGTACAAGCCTCCAAGGACTTGGCTAGGCTTGAAGATGAGATCACCTCCTGGATGGCCTCAAATG CAGGTCCTAAGCTTTTAAAGCCGTGA
AA sequence Show only first row Show all	>Lus10009920 pacid=23150090 polypeptide=Lus10009920 locus=Lus10009920.g ID=Lus10009920.BGIv1.0 annot-version=v1.0 MASCLRSHQLMLQSLNNFTTGFSDYPLLPPSHRRHRFRPLDSLLHRRATTTRICCQYDDTGSKPSQPSSSGIQVYGQIERILTETVRQSQTSWGSSADWT EIEGAWVLKPRNAKPTSVVHFIGGIFVGAAPQLAYRLFLEHLAEKGALVIATPYASGFDYFHIADEVQFKYDRVIRFLQESVQDLPTFGIGHSLGSVIHL LIGSRYAVQRSGNVLMSFNNKEASLAVPLFSPVLLPMAQSIGPILSQIASSPTVRMGAEMTLKQIESLTPPFMKQAFPLIEQLPPLYMDLVNGREEFSPK PEETRRLIKSYYGVSRNLLVKFKDDSIDETMSLAQVLSSESAISSMLDMSIRSLPGDHALPLQQAIPDVPPAMASAVNRGSELFTNLTAGTPWETVAKEV GNTLGTDNRILRVQASKDLARLEDEITSWMASNAGPKLLKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47860			Protein of unknown function (D...		Lus10009920 [exp]	0	1
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10013645 [exp]	4.6	0.7363
AT2G41120			unknown protein		Lus10033361 [exp]	5.7	0.7622
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10008419 [exp]	6.3	0.7539
AT2G47390			Prolyl oligopeptidase family p...		Lus10010007 [exp]	7.1	0.7385
AT3G16560			Protein phosphatase 2C family ...		Lus10004793 [exp]	13.5	0.7175
AT4G27290			S-locus lectin protein kinase ...		Lus10039767 [exp]	15.7	0.7450
AT3G53810			Concanavalin A-like lectin pro...		Lus10029315 [exp]	15.9	0.7384
AT4G31390			Protein kinase superfamily pro...		Lus10020152 [exp]	16.4	0.7445
AT1G79600			Protein kinase superfamily pro...		Lus10035701 [exp]	31.0	0.7299
AT1G73300		SCPL2	serine carboxypeptidase-like 2...		Lus10012718 [exp]	35.4	0.7296

Compare expression of checked genes

Lus10009920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.