Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58350 546 / 0 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT3G51630 532 / 0 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT3G22420 433 / 2e-147 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT3G48260 431 / 2e-147 WNK3 with no lysine (K) kinase 3 (.1) AT5G28080 425 / 4e-145 WNK9 Protein kinase superfamily protein (.1.2) AT3G04910 382 / 6e-126 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT1G49160 378 / 7e-126 WNK7 Protein kinase superfamily protein (.1.2) AT3G18750 373 / 7e-124 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT5G41990 350 / 5e-115 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT1G64630 348 / 1e-114 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024192 [exp] 919 / 0 AT5G58350 540 / 0.0 with no lysine (K) kinase 4 (.1) Lus10008590 [exp] 739 / 0 AT5G58350 624 / 0.0 with no lysine (K) kinase 4 (.1) Lus10042223 [exp] 738 / 0 AT5G58350 630 / 0.0 with no lysine (K) kinase 4 (.1) Lus10014165 [exp] 500 / 8e-173 AT3G51630 609 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Lus10022747 [exp] 494 / 4e-170 AT3G51630 597 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Lus10010547 [exp] 441 / 4e-149 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10004904 [exp] 439 / 3e-148 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) Lus10001789 [exp] 438 / 2e-147 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10020236 [exp] 437 / 3e-147 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G155100 [exp] 620 / 0 AT5G58350 689 / 0.0 with no lysine (K) kinase 4 (.1) Potri.019G128600 [exp] 595 / 0 AT5G58350 662 / 0.0 with no lysine (K) kinase 4 (.1) Potri.016G134600 [exp] 533 / 0 AT3G51630 591 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Potri.005G049800 [exp] 453 / 4e-153 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.013G036300 [exp] 445 / 8e-150 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 440 / 7e-148 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.008G152300 [exp] 429 / 1e-143 AT3G04910 726 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.012G086700 [exp] 421 / 2e-142 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.015G084600 [exp] 419 / 2e-141 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.005G057300 [exp] 374 / 5e-123 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10009921 pacid=23150115 polypeptide=Lus10009921 locus=Lus10009921.g ID=Lus10009921.BGIv1.0 annot-version=v1.0 ATGAACAGTAACCCACCTCTGGATGAGTGTCAGGACGACCATGCTTACGTGGAGACTGATCCTAGTCGCCGGTACGGACGGTTCAATGAAATTCTTGGTA AGGGAGCAACAAAGACAGTATACAAAGCAATCGATGAATTCCTTGGACTGGAAGTGGCATGGAACCAAGTCAAACTCAATGTACCAGGCGATTTGCAGAG GCTCTACTCAGAAGTTCATCTTCTCACTACGCTTAACCATCCTTCCATCGTCCGTTTCCACTCGTCTTGGATCGACAGTCATCACCAGACTTTCAACTCC ATCACTGAAATGTTCACATCTGGGACTCTCAGAGAGTACCGTATGAAGTATCGCAGAGTGAACATAAGAGCTATAAAGAGATGGGCTCGTCAAGTGTTAC AAGGTCTTGTTTACTTGCATAGCCATGATCCCCCAGTGATTCATCGTGACTTGAAATGTGACAACATTTTTGTCAATGGTCATCTTGGACAAGTCAAGAT TGGCGATTTCGGGTTTGCTGCACTACTTCAGGACTCCCCATCAGCTCACAGAGTAATAGGGACCTCAGAGTTCATGGCTCCGGAATTATATGAAGAAGAT TACAATGAGCTAGTTGATGTCTACTCATTTGGGATGTGTGTTTTGGAGATGATCACTGCTGAATACCCTTACACTGAATGTGCTAATCCAGCAGAGATAT ACAAGAAAGTCACCTCAGGGAAGTTACCAGCAGCGTATTACAGGCTCAGTGACATGGAAGCACAGCGATTTCTAGGGAGATGCTTAGTTAGTGCTTCGGA GAGAGTATCTGCAAAAGAGCTCTTGTTAGATCCTTTTGTCGCAGCAGAACCTTATATAGAAGGGGTGGGAAGTCCCAAGCCATTTTTGAACGCCAACGAA ATGGAGAAACTGAAGCTGAGTCATGATGCACCATCTAAGACAGACATGAGAATCACAGGGAAATTAAACCCGGATGATACCATCTTCCTCAAAGTGAAAA TCTTCAATGAAGATGGTTCCCTTAGGAATGTGTTTTTTCCGTTTGATATTTTACATGATACACCACTGAATGTTGCAATGGAGATGGCGAAGGAGCTGGA AATTGATGATTGGGAACCATCTGAAATTGCTGTAATGATTGACCAAGAGATTTCAGCCCTGCTGCCAAATCGCAATAAGAGTTGGCAATTTCCTGATCCT GGCAGAACATTTCGGCCACAAGGAAGCTCGAAATCTGACGGGGAAGTCCTTGCCAAGACTGCCTACAAAAACTACATGGCTTTACTCGAGTCACAACGTG GAGACCGTAGCTCTAGAAACAGAAGGGCCATGGACAGCCGGAGATTGACAAGGAACCGGTCGCTAGTGGACCTTCACAGCCAGTTGCTACACAGGTCATT GTTGGAAGAAGTGCACAAGCGGCGACTGGTGAATACAGTTGGCGCTGTCGAAAATATTGGTTTCCAGACACCTCATTGA
AA sequence Show only first row Show all	>Lus10009921 pacid=23150115 polypeptide=Lus10009921 locus=Lus10009921.g ID=Lus10009921.BGIv1.0 annot-version=v1.0 MNSNPPLDECQDDHAYVETDPSRRYGRFNEILGKGATKTVYKAIDEFLGLEVAWNQVKLNVPGDLQRLYSEVHLLTTLNHPSIVRFHSSWIDSHHQTFNS ITEMFTSGTLREYRMKYRRVNIRAIKRWARQVLQGLVYLHSHDPPVIHRDLKCDNIFVNGHLGQVKIGDFGFAALLQDSPSAHRVIGTSEFMAPELYEED YNELVDVYSFGMCVLEMITAEYPYTECANPAEIYKKVTSGKLPAAYYRLSDMEAQRFLGRCLVSASERVSAKELLLDPFVAAEPYIEGVGSPKPFLNANE MEKLKLSHDAPSKTDMRITGKLNPDDTIFLKVKIFNEDGSLRNVFFPFDILHDTPLNVAMEMAKELEIDDWEPSEIAVMIDQEISALLPNRNKSWQFPDP GRTFRPQGSSKSDGEVLAKTAYKNYMALLESQRGDRSSRNRRAMDSRRLTRNRSLVDLHSQLLHRSLLEEVHKRRLVNTVGAVENIGFQTPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10009921 [exp]	0	1
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10026510 [exp]	4.9	0.8486
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10012770 [exp]	5.3	0.8559
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10040903 [exp]	6.7	0.8478
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10021721 [exp]	9.9	0.8513
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10018626 [exp]	10.2	0.8516
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10038784 [exp]	14.7	0.8399
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033502 [exp]	15.1	0.8219
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10021856 [exp]	18.6	0.8184
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10029804 [exp]	19.7	0.8412
AT3G62060			Pectinacetylesterase family pr...		Lus10038024 [exp]	20.1	0.8213

Compare expression of checked genes

Lus10009921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.