Plant FIBer expression Database

Lus10009922 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G30395 122 / 2e-35 OFP ATOFP17, OFP17 ovate family protein 17 (.1)
AT1G06923 102 / 1e-27 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024191
[exp]
233 / 2e-79 AT2G30395 137 / 2e-41 ovate family protein 17 (.1)
Lus10008588
[exp]
129 / 4e-38 AT2G30395 97 / 2e-25 ovate family protein 17 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G155300
[exp]
167 / 2e-53 AT2G30395 121 / 1e-34 ovate family protein 17 (.1)
Potri.019G128400
[exp]
151 / 8e-47 AT2G30395 136 / 1e-40 ovate family protein 17 (.1)
PFAM info
Representative CDS sequence
>Lus10009922 pacid=23150084 polypeptide=Lus10009922 locus=Lus10009922.g ID=Lus10009922.BGIv1.0 annot-version=v1.0
ATGAAACCATTGGTTGCCTTCAGATCTAAGCTTCTCGCACCATGCAGGCGACTCTTCCGCTCTTTCAGGTTCAAGCTCAGGAAGCCGTTCTTTATAAAGC
CCTTCCGGATCCTCCGTCCCCATCGTGCCAAGTCTCGGCGGAGGAACATGGACCGGGTGATGGAGCTCAAGAGTGTATCCGAATCAGGGGAACAACAGGA
CAGTAAGAAGCTATTATTATCATTCAATTCTTCTTCTTCTTCCCCAGTCACTCCAGCTTACATTAAGGCGTTCAGAGCTGCTAGAAGGGATAGCAGCAAG
TTCGGCGATGAAGCGGTTGAAGATGCATGCAGAAGCTTTGAAAACTACTTGGTGGAGATGATAGTTGAAGAAGGCAAGATGAAGGACTTGACCGATGTCG
AGGAGCTTCTCTATTGTTGGAAGAACCTCAAGTCCCCTGTCTTCATTAGCTTGGTCTGTAGATTCTATGGTGAGCTCTGTAAGGACTTGTTTGCTCCAGA
TTATGAAAAATGA
AA sequence
>Lus10009922 pacid=23150084 polypeptide=Lus10009922 locus=Lus10009922.g ID=Lus10009922.BGIv1.0 annot-version=v1.0
MKPLVAFRSKLLAPCRRLFRSFRFKLRKPFFIKPFRILRPHRAKSRRRNMDRVMELKSVSESGEQQDSKKLLLSFNSSSSSPVTPAYIKAFRAARRDSSK
FGDEAVEDACRSFENYLVEMIVEEGKMKDLTDVEELLYCWKNLKSPVFISLVCRFYGELCKDLFAPDYEK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G30395 OFP ATOFP17, OFP17 ovate family protein 17 (.1) Lus10009922
[exp]
0 1
AT3G60890 ZPR2 LITTLE ZIPPER 2, protein bindi... Lus10028902
[exp]
2.2 0.9732
AT2G04850 Auxin-responsive family protei... Lus10001736
[exp]
2.8 0.9798
AT5G03170 ATFLA11, FLA11,... ARABIDOPSIS FASCICLIN-LIKE ARA... Lus10026499
[exp]
3.9 0.9768
AT5G61340 unknown protein Lus10034727
[exp]
4.2 0.9778
AT5G61340 unknown protein Lus10021641
[exp]
6.0 0.9758
AT3G27200 Cupredoxin superfamily protein... Lus10022350
[exp]
6.9 0.9715
AT5G12870 MYB ATMYB46 myb domain protein 46 (.1) Lus10002559
[exp]
7.2 0.9628
AT2G38080 ATLMCO4, IRX12,... LACCASE 4, IRREGULAR XYLEM 12,... Lus10018208
[exp]
8.5 0.9634
AT5G60020 LAC17, ATLAC17 laccase 17 (.1) Lus10019122
[exp]
9.5 0.9642
AT5G37478 TPX2 (targeting protein for Xk... Lus10020800
[exp]
10.6 0.9671

Lus10009922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.