Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45260 275 / 2e-88 Plant protein of unknown function (DUF641) (.1) AT2G30380 248 / 7e-77 Plant protein of unknown function (DUF641) (.1) AT3G60680 188 / 3e-54 Plant protein of unknown function (DUF641) (.1) AT1G29300 185 / 1e-53 UNE1 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) AT3G14870 185 / 2e-53 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G53380 177 / 2e-50 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT5G58960 157 / 6e-43 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT4G34080 151 / 1e-42 Plant protein of unknown function (DUF641) (.1) AT4G33320 149 / 9e-42 Plant protein of unknown function (DUF641) (.1) AT4G36100 61 / 2e-10 Sec1/munc18-like (SM) proteins superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024190 [exp] 780 / 0 AT2G45260 270 / 1e-86 Plant protein of unknown function (DUF641) (.1) Lus10008587 [exp] 585 / 0 AT2G45260 266 / 1e-84 Plant protein of unknown function (DUF641) (.1) Lus10030291 [exp] 270 / 1e-86 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10001989 [exp] 265 / 2e-84 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10009284 [exp] 198 / 6e-58 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10016444 [exp] 188 / 1e-53 AT5G58960 635 / 0.0 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Lus10007312 [exp] 172 / 1e-48 AT1G29300 433 / 2e-149 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10005424 [exp] 169 / 1e-47 AT1G29300 365 / 3e-123 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10029259 [exp] 169 / 2e-47 AT1G29300 419 / 6e-144 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G155400 [exp] 514 / 0 AT2G45260 300 / 4e-98 Plant protein of unknown function (DUF641) (.1) Potri.019G128300 [exp] 419 / 1e-144 AT2G45260 241 / 2e-75 Plant protein of unknown function (DUF641) (.1) Potri.002G145900 [exp] 274 / 5e-88 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.011G108000 [exp] 208 / 3e-62 AT1G53380 531 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.001G387700 [exp] 200 / 3e-59 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.002G145000 [exp] 195 / 5e-57 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.014G066600 [exp] 190 / 4e-55 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.014G067600 [exp] 181 / 2e-53 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1) Potri.009G041000 [exp] 184 / 4e-52 AT5G58960 466 / 2e-159 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.004G061600 [exp] 176 / 4e-50 AT1G29300 485 / 6e-170 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04859 [flax] [poplar] DUF641 Plant protein of unknown function (DUF641)
Representative CDS sequence Show only first row Show all	>Lus10009923 pacid=23150125 polypeptide=Lus10009923 locus=Lus10009923.g ID=Lus10009923.BGIv1.0 annot-version=v1.0 ATGGAGTGTGCTCAGACTAAACCCTTAAAGCAGCCTTCTTCAAACATAACGGATATGGTCTCCAAGTTTGCCAAAGTTTGCAGATTGAGATCCATTGGTG TGTTCTCAGGCGAAAACCCTCATACCCAGAACCACCCAGCAGTCATTCACAAGGCGCCATTGATTGGTGAGAGTAGCAGTAGTACCAGTGATGCTACCAC TGAAGAGATTGAGTGCGGCGACGTTAGGGAAAAAGTTCCTCCTGGGAAGATGAGTGGTGGCGACAAGGATATCATCAAGTTGTTTGATTCAGTTTCTGCT CTGAAATTGGCATATGTTCAGCTTCAGGAAGCTCACGTCCCTTATAATCCTGAAAAGCTTCTTGCTGCTGATGAAGTCGTCATGTCTCAGCTTCAGACTT TATGCAACATCAGGAGGTCAGTTAGGGAGAAGCGGTTGGAGAAGACAAAGCTCGAATCTTTACGAGCAGAGCTTGAAGCTAAAGAGAGGGTATTGGAGCT GCTAAAATCGCAGAGCGGGGCTAAAGAGGCCGAGATTGAGCGATTGAGGGACGAGCTCCATGATCTGGATACGGGGACTTTGCTGTTGGTTGAGACAATC AAGGCGAAAAGCTTGGAGAGTAGGAGTTGGAAAGTTGCAGATACGGCCATGTTTGAGGAAATCTTCAGATTGGCTTATAAGTCGATTCATGATTTTGCAA AGCCAATGATCAGCCTGATGAAAGCTTCAGGGTGGGATTTGGACTTGGCTGCCAATGCGGTTGTAGATGGAGCGACTTATTCCAAAAGGTCACATAAGAA GTATGCGTTCGAAGCATACATTTCGCGGAGAATATTCCAAGGGATGACACTTAAGTCGTGTGATGTAGATGATGTTTTGAGGTCTGAAGATCCTATTAAA CTGCTGATAGAGAATCCGAGTTCGGGGTTTGCCAACTTCTGTGCGAAAAGGTACTTGCTTGTTGTTCATCCAGTGATGGAGGTTTCTTTCTTTAGGAATT TGGATCATAGGATGTTGGTGATTAGTGGGAAGCATCCGAGAACACCTTTCTACCAAATATTTGTGAGAATGGGGAAGTGGATTTGGGTTCTACGGGGAGT TGCCACATCAATTGATCCCCAAGCAAAAGTATTTGCAGTGAGCAGGGGAAGTGAATTCTCAGATGTCTATATGGAATCTGTCGAAGAGAGGAAGGCAGAC AATAAGCAATTCATTGTTGAATTCATGATTATGCCTGGTTTCAGAATTGGGGACAGATTGATCAAATCCCTGGTTTATCTTTCCAAACCAAAATAG
AA sequence Show only first row Show all	>Lus10009923 pacid=23150125 polypeptide=Lus10009923 locus=Lus10009923.g ID=Lus10009923.BGIv1.0 annot-version=v1.0 MECAQTKPLKQPSSNITDMVSKFAKVCRLRSIGVFSGENPHTQNHPAVIHKAPLIGESSSSTSDATTEEIECGDVREKVPPGKMSGGDKDIIKLFDSVSA LKLAYVQLQEAHVPYNPEKLLAADEVVMSQLQTLCNIRRSVREKRLEKTKLESLRAELEAKERVLELLKSQSGAKEAEIERLRDELHDLDTGTLLLVETI KAKSLESRSWKVADTAMFEEIFRLAYKSIHDFAKPMISLMKASGWDLDLAANAVVDGATYSKRSHKKYAFEAYISRRIFQGMTLKSCDVDDVLRSEDPIK LLIENPSSGFANFCAKRYLLVVHPVMEVSFFRNLDHRMLVISGKHPRTPFYQIFVRMGKWIWVLRGVATSIDPQAKVFAVSRGSEFSDVYMESVEERKAD NKQFIVEFMIMPGFRIGDRLIKSLVYLSKPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45260			Plant protein of unknown funct...		Lus10009923 [exp]	0	1
AT3G05470			Actin-binding FH2 (formin homo...		Lus10029897 [exp]	3.5	0.9148
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10000986 [exp]	4.8	0.9338
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10003750 [exp]	5.7	0.9322
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011559 [exp]	7.1	0.9252
AT5G19340			unknown protein		Lus10041215 [exp]	7.1	0.9315
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10019275 [exp]	10.6	0.9118
AT4G14310			Transducin/WD40 repeat-like su...		Lus10011802 [exp]	11.5	0.9303
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Lus10004720 [exp]	14.4	0.9007
AT3G03770			Leucine-rich repeat protein ki...		Lus10033407 [exp]	15.8	0.8637
AT1G77580			Plant protein of unknown funct...		Lus10029679 [exp]	16.4	0.8992

Compare expression of checked genes

Lus10009923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.