Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30360 518 / 0 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT4G18700 431 / 2e-147 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G01820 428 / 5e-147 PKS24, CIPK14, ATSR1, SnRK3.15, ATCIPK14 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) AT1G29230 415 / 9e-141 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT5G45810 410 / 1e-139 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT5G45820 409 / 2e-139 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT2G38490 400 / 4e-136 CIPK22, SnRK3.19 SNF1-RELATED PROTEIN KINASE 3.19, CBL-interacting protein kinase 22 (.1) AT2G34180 401 / 1e-135 ATWL2, CIPK13, SnRK3.7 SNF1-RELATED PROTEIN KINASE 3.7, WPL4-LIKE 2, CBL-interacting protein kinase 13 (.1) AT4G30960 392 / 4e-133 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G10930 384 / 1e-129 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025245 [exp] 486 / 4e-170 AT5G01820 504 / 1e-177 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Lus10009103 [exp] 471 / 5e-164 AT2G30360 501 / 1e-176 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10022748 [exp] 467 / 1e-162 AT2G30360 491 / 3e-173 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10015275 [exp] 419 / 3e-142 AT4G18700 736 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10021852 [exp] 409 / 1e-139 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 405 / 3e-138 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10022749 [exp] 400 / 5e-136 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 390 / 4e-132 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 380 / 4e-128 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G155600 [exp] 579 / 0 AT2G30360 536 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Potri.019G128100 [exp] 561 / 0 AT2G30360 531 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Potri.016G133900 [exp] 491 / 4e-172 AT5G01820 490 / 2e-172 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Potri.011G067600 [exp] 427 / 3e-145 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.004G058300 [exp] 416 / 2e-141 AT4G18700 735 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.006G186200 [exp] 405 / 5e-138 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G108500 [exp] 403 / 3e-137 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.016G133500 [exp] 403 / 6e-137 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 397 / 1e-134 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.006G263500 [exp] 395 / 7e-134 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10009925 pacid=23150142 polypeptide=Lus10009925 locus=Lus10009925.g ID=Lus10009925.BGIv1.0 annot-version=v1.0 ATGGGGTTAAAGAAGATAAAAGGGTTATCATCATCATCATCATTGAGAAGAAGCTGCTGCAGAACAACACTCTGTTTCTTCTTCTGCTTCTCTGTTTTCT TACTCTCATCATCCTTCACAAAAACACTTCCTTCTTCCCTTTCTAGTACTCTATCTCTTGATGGAATCAAGTGCCCCTTCTCTGCTCCCACGGATTTGTG TTTTCAGCTCGGAAAGCTCGTGGGCTGTGGCGCCTTCGCCAAGGTCTACCACGCTCGCAACATCTCCACCGGCCAGAGCGTCGCCGTCAAGGTCATCAAC AAGAAGAAAATCACCACCCCGTCCATGATGTCCAACATCAAGCGCGAAATCTCCATCATGCGCCGTCTCAGCCACCCTCACATCGTCAAGCTCCACGAGG TCCTCGCCACAAGGACCAAAATCTACTTCATCATGGAGTTCGTCAAGGGAGGAGAGCTCTTCGCCAAGATCTCCAAAGGACGGTTCAGTGACGATCTCGC CAGGAAGTACTTCCGCCAGCTGATCTCCGCCGTCGGATACTGCCACTCCCGTGGCGTTTTCCACCGAGATTTGAAGCCAGAGAACCTCCTCCTCGACGAG AGCGGTAACCTTAAGGTCTCCGATTTCGGTCTCAGCGCGGTTACAACGCAGATCCGGGCCGACGGTCTTCTCCATACGCTTTGCGGTACCCCTGCCTACG TTGCGCCGGAGATCCTCGGGAAGAAAGGCTACGACGGAGCCAAGGTTGATGTGTGGTCCTGCGGTGTGATTCTGTTCGTGTTGACGGCGGGTTATCTTCC GTTCAGCGATCCGAATTTGATGGGGATGTACAAGAAGATCTACAAAGGTGAGTACCGGTGCCCTAAATGGATGTCGAGCGAACTCAAACGATTCCTATCC CGGCTTCTCGACACCAACCCCGAGACGAGGATCACCGTCGACGAGATTCTGACAGATCCGTGGTTCACCAAGGGACACAAGAAGCCGATCAAGTTCTACG ACGAAGATCTGTCTTCGGAAAATAAATTCAATTTCGATTTGAAAGAGAATTCGCAGGAGGCTAGCAGCAGCAGCGCCAGTCTAAATGCGTTCGATCTGAT CTCCTTCTCATCTGGATTGAACCTTTCCGGCTTGTTCGATAGCACGTTCAACGCGATGGAGGACGGCGATCGGTTCGTGTCTTCAGAGTCCCCGGAGAGT TTATTGGAGAGAGTTGTAGAAGTTGCCAAGTCGGAACGGTTGAAATTGAAGAGGAATAAATTATACGGGATAGAGCTGGAAGAGCGAAACGGCGGTGGTG TGAAACTGGAGGTTGAGATTTACCGTTTGACGGACGATTTGGCGGTTGTGGAGGCAAGGAGATTATCCGGTGATGCGGGAAGCTACAAGGAGACGTGGCT TAACAAGCTAAAGCCGGAGCTTCTCCGTTGCCAGGCGGCGGCGGCGGCGCCACAGGAAAGTCCCGTTGCTGACAATTAA
AA sequence Show only first row Show all	>Lus10009925 pacid=23150142 polypeptide=Lus10009925 locus=Lus10009925.g ID=Lus10009925.BGIv1.0 annot-version=v1.0 MGLKKIKGLSSSSSLRRSCCRTTLCFFFCFSVFLLSSSFTKTLPSSLSSTLSLDGIKCPFSAPTDLCFQLGKLVGCGAFAKVYHARNISTGQSVAVKVIN KKKITTPSMMSNIKREISIMRRLSHPHIVKLHEVLATRTKIYFIMEFVKGGELFAKISKGRFSDDLARKYFRQLISAVGYCHSRGVFHRDLKPENLLLDE SGNLKVSDFGLSAVTTQIRADGLLHTLCGTPAYVAPEILGKKGYDGAKVDVWSCGVILFVLTAGYLPFSDPNLMGMYKKIYKGEYRCPKWMSSELKRFLS RLLDTNPETRITVDEILTDPWFTKGHKKPIKFYDEDLSSENKFNFDLKENSQEASSSSASLNAFDLISFSSGLNLSGLFDSTFNAMEDGDRFVSSESPES LLERVVEVAKSERLKLKRNKLYGIELEERNGGGVKLEVEIYRLTDDLAVVEARRLSGDAGSYKETWLNKLKPELLRCQAAAAAPQESPVADN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009925 [exp]	0	1
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	1.4	0.9037
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	1.4	0.9001
AT5G11090			serine-rich protein-related (....		Lus10001946 [exp]	1.7	0.8968
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10037437 [exp]	2.8	0.8811
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029267 [exp]	3.2	0.8793
AT5G11000			Plant protein of unknown funct...		Lus10041022 [exp]	4.9	0.8430
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Lus10000966 [exp]	4.9	0.8571
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10015471 [exp]	5.2	0.8528
AT1G57680			unknown protein		Lus10028891 [exp]	5.8	0.8100
AT4G22240			Plastid-lipid associated prote...		Lus10001099 [exp]	8.1	0.8481

Compare expression of checked genes

Lus10009925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.