Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58170 81 / 5e-21 ATBET11, ATBS14A ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) AT4G14455 57 / 1e-11 ATBS14B ,ATBET12 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024876 [exp] 102 / 6e-27 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10000706 [exp] 102 / 8e-27 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10033868 [exp] 96 / 8e-27 AT3G58170 187 / 1e-62 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) Lus10041158 [exp] 55 / 1e-10 AT4G14455 164 / 6e-53 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G041500 [exp] 87 / 1e-23 AT3G58170 202 / 7e-69 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) Potri.005G221600 [exp] 87 / 1e-23 AT3G58170 206 / 4e-70 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) Potri.010G074100 [exp] 61 / 4e-13 AT4G14455 147 / 1e-46 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1) Potri.008G164600 [exp] 37 / 0.0002 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009926 pacid=23150122 polypeptide=Lus10009926 locus=Lus10009926.g ID=Lus10009926.BGIv1.0 annot-version=v1.0 ATGGACATCGCTGCCAAACAGCAGGGTAGGTTTTGGGAAGTTCCAGACTTGGTCTACATTCCTATCCTTCTTGCTTATCGCCATCCTTCCTTATACAGGG ATATCAGGAACAACAAGACTGCTCTCTTCGATGGCATAGAGGAGGGTGGCATCAGAGCTTCTTCTTCTTACTCCCATGAAATTAACGAGCAAGCCAATGA AAGTGCCCTCGAAGGGTTACAGGACAGAGTCAATCTGCTGAAGCGGGTCAGTGATACTAAATCGAATTTGCAGCAAGTCTCGTGTTAG
AA sequence Show only first row Show all	>Lus10009926 pacid=23150122 polypeptide=Lus10009926 locus=Lus10009926.g ID=Lus10009926.BGIv1.0 annot-version=v1.0 MDIAAKQQGRFWEVPDLVYIPILLAYRHPSLYRDIRNNKTALFDGIEEGGIRASSSYSHEINEQANESALEGLQDRVNLLKRVSDTKSNLQQVSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10009926 [exp]	0	1
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	3.5	0.9990
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10016711 [exp]	4.9	0.9990
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	6.0	0.9990
AT5G08110			nucleic acid binding;ATP-depen...		Lus10013505 [exp]	6.3	0.9238
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	6.9	0.9990
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	7.7	0.9990
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	8.5	0.9990
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10020822 [exp]	9.1	0.7741
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	9.2	0.9990
AT1G01450			Protein kinase superfamily pro...		Lus10041113 [exp]	9.8	0.9990

Compare expression of checked genes

Lus10009926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.