Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024187 [exp] 229 / 7e-73 AT2G30350 268 / 1e-86 Excinuclease ABC, C subunit, N-terminal (.1.2) Lus10002053 [exp] 95 / 6e-22 AT5G62440 98 / 2e-23 Protein of unknown function (DUF3223) (.1) Lus10008583 [exp] 64 / 3e-13 ND / Lus10024223 [exp] 64 / 1e-12 ND / Lus10042228 [exp] 66 / 6e-12 AT2G30350 257 / 9e-83 Excinuclease ABC, C subunit, N-terminal (.1.2) Lus10021669 [exp] 41 / 0.0003 AT5G62440 180 / 1e-57 Protein of unknown function (DUF3223) (.1) Lus10035009 [exp] 40 / 0.0008 AT5G62440 179 / 5e-57 Protein of unknown function (DUF3223) (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009927 pacid=23150101 polypeptide=Lus10009927 locus=Lus10009927.g ID=Lus10009927.BGIv1.0 annot-version=v1.0 ATGTGGGAGGAGAAGAAGACTCGCTTAGGGAGTATCAAATCATTTATAACCCGAGAAGGCCAAACGTTGTGGGATGGACCACCCTTATTCATCGTTTGGG AAAATGGTTTTATAGAGCCTTTGGACGTCATGACGTGTGTCGACGACATCCTTCCCTTGCCAGAAGACTATAAACACCTAACTGCTAATTATAGTGCTGG TAAAAGTCCTCAAGGAGGAGGTAGAAAAGGTGGTGCTAGCAAAGGAACCAGAAGAGGGGGTCGAGGTAGAGGCCGTCGCCGTCTCCTATATGATGAATAT GGTATCATTGACGATTCTTCGAATGCAAAGGGGGCATGGTTTGAAGAGGAACGTGACTGGACACTTTCGAGCTGTTCCTCTCCTAACCGAGAAGTAGATG ATGGGAAGTATGCATTCAACGGTTCGACTTTGGGAAGAATCTCTCCGATTCGTAGCAAGTTGCCGTCTGTGGGAGAGATGTCAGATGGGAGTAATGTAGT GGTGATGATCAGTGGCGGGAGTTATTTGAAATTTTGTTCCGTGAAAAGGAAGGAGGAATCTACAGATAGGGATGTTGCTGCTGGTAAAGATGCAGCAGCA TACTGTTCGGCCAATTTTTCGACTCAAATTGAGGTTATAGATTTGTTGTCGCCATCACCGGAGTTGAGAATGTGGTCAATCAGCAAGAAGAGGAGATTTG CTGATGCTGTTTCTCCCCGATTCATCGACCGACTTTGCAAGAGACTGAAAGGGACATCCTGCTGCATAACAGTTGGTTTCTCCATCATGATTAGAAGAAT GGTAGTTAGAGTGATTAGTAATAAACTATGA
AA sequence Show only first row Show all	>Lus10009927 pacid=23150101 polypeptide=Lus10009927 locus=Lus10009927.g ID=Lus10009927.BGIv1.0 annot-version=v1.0 MWEEKKTRLGSIKSFITREGQTLWDGPPLFIVWENGFIEPLDVMTCVDDILPLPEDYKHLTANYSAGKSPQGGGRKGGASKGTRRGGRGRGRRRLLYDEY GIIDDSSNAKGAWFEEERDWTLSSCSSPNREVDDGKYAFNGSTLGRISPIRSKLPSVGEMSDGSNVVVMISGGSYLKFCSVKRKEESTDRDVAAGKDAAA YCSANFSTQIEVIDLLSPSPELRMWSISKKRRFADAVSPRFIDRLCKRLKGTSCCITVGFSIMIRRMVVRVISNKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009927 [exp]	0	1
					Lus10039496 [exp]	1.0	0.9908
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10028330 [exp]	2.2	0.9771
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Lus10042464 [exp]	2.4	0.9762
AT4G30550		GGP3	gamma-glutamyl peptidase 3, Cl...		Lus10015493 [exp]	2.8	0.9846
					Lus10018837 [exp]	3.0	0.9844
					Lus10034352 [exp]	3.5	0.9779
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032621 [exp]	5.3	0.9550
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10008669 [exp]	5.5	0.9677
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10043352 [exp]	5.7	0.9540
AT5G05340			Peroxidase superfamily protein...		Lus10030149 [exp]	5.7	0.9721

Compare expression of checked genes

Lus10009927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.