Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06930 46 / 3e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024185 [exp] 167 / 1e-51 AT1G06930 61 / 2e-11 unknown protein Lus10025251 [exp] 41 / 0.0004 AT1G06930 47 / 8e-07 unknown protein Lus10030550 [exp] 40 / 0.0005 AT5G01790 50 / 2e-07 unknown protein Lus10034209 [exp] 40 / 0.0005 AT1G06930 52 / 8e-09 unknown protein Lus10029060 [exp] 40 / 0.0007 AT5G01790 46 / 2e-06 unknown protein Lus10009096 [exp] 40 / 0.0007 AT1G06930 47 / 2e-06 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G127400 [exp] 49 / 5e-07 AT1G06930 / unknown protein Potri.013G156100 [exp] 49 / 8e-07 AT1G06930 / unknown protein Potri.016G133200 [exp] 42 / 0.0002 AT2G40475 50 / 1e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.013G083101 [exp] 41 / 0.0002 AT2G40475 60 / 3e-11 ALTERED SEED GERMINATION 8, unknown protein Potri.006G107200 [exp] 40 / 0.0004 AT2G40475 49 / 4e-07 ALTERED SEED GERMINATION 8, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009929 pacid=23150131 polypeptide=Lus10009929 locus=Lus10009929.g ID=Lus10009929.BGIv1.0 annot-version=v1.0 ATGGTACTCACAACAACTCAAAAGCCAACCCCTCTTGTCCTCAAACCCAACCAAGAAGAAGAAGACTACCACGGCGGCTCACCGGCCGCGGTCCCCTTCA CTTGGGAGTCCCAACCTGGGACTCCCAAGGCTCGTAAAGAATCCCTTCCACTTCCGCCACTCACTCCCCCGCCTTCCTACTTTTACTCTTCTCCCCATTT CGCCACCCCGATGAGATCCCCGAAGAAGAAGAAGAAGGAAAACAAGCGCAATTTCTTCTTATTCTCAAAACCATGGGTTTCTTCCAAGCCAAGCAACAAA AACAACAACAAATCGAAGCTGGATTCGCCTGTCTATTCTTCGTCCTCCTCGTCTTATTCTTCTGCATCGGCTTCCTCCTCCTCAGTGCCTTCTTCCCCGT TGACTAGTAATAATGCGGTGGTGGCTAATTCGACCCCGAGGAATAAGTCGTCCTTTGGGGACATGATAGTAGCCGAGGATCGTGTGCATCATCATCATCA TCGTCGTCATCCAAATAATGAGGTCGACAATGAGGAGGAGGAAGAGGAGGAATGTAGTGAGTCGTCACCGGTTTCGACTTTGTGCTTCGGCGGTGGACCG GGTCGTGGTGGCGGTGCACCAAGGGCGAGGGCCGGCTGTTATGCTTCCATCTTCAAGGTATTGATGCTTAGAGACGCTTGA
AA sequence Show only first row Show all	>Lus10009929 pacid=23150131 polypeptide=Lus10009929 locus=Lus10009929.g ID=Lus10009929.BGIv1.0 annot-version=v1.0 MVLTTTQKPTPLVLKPNQEEEDYHGGSPAAVPFTWESQPGTPKARKESLPLPPLTPPPSYFYSSPHFATPMRSPKKKKKENKRNFFLFSKPWVSSKPSNK NNNKSKLDSPVYSSSSSSYSSASASSSSVPSSPLTSNNAVVANSTPRNKSSFGDMIVAEDRVHHHHHRRHPNNEVDNEEEEEEECSESSPVSTLCFGGGP GRGGGAPRARAGCYASIFKVLMLRDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06930			unknown protein		Lus10009929 [exp]	0	1
					Lus10005393 [exp]	1.4	0.9886
					Lus10005394 [exp]	2.8	0.9834
AT5G54370			Late embryogenesis abundant (L...		Lus10033540 [exp]	3.7	0.9846
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10020803 [exp]	3.9	0.9836
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10012157 [exp]	5.5	0.9776
AT5G62280			Protein of unknown function (D...		Lus10027191 [exp]	5.9	0.9809
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024616 [exp]	6.3	0.9790
AT5G54370			Late embryogenesis abundant (L...		Lus10017577 [exp]	6.5	0.9816
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Lus10005544 [exp]	6.6	0.9768
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031377 [exp]	7.1	0.9827

Compare expression of checked genes

Lus10009929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.