Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30340 225 / 5e-74 AS2 LBD13 LOB domain-containing protein 13 (.1) AT2G40470 212 / 1e-69 AS2 ASL11, LBD15 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) AT2G30130 157 / 3e-48 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT1G31320 146 / 2e-44 AS2 LBD4 LOB domain-containing protein 4 (.1) AT3G27650 142 / 4e-43 AS2 LBD25 LOB domain-containing protein 25 (.1) AT5G63090 142 / 2e-42 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT1G16530 140 / 4e-42 AS2 ASL9, LBD3 LOB DOMAIN-CONTAINING PROTEIN 3, ASYMMETRIC LEAVES 2-like 9 (.1) AT1G07900 140 / 5e-42 AS2 LBD1 LOB domain-containing protein 1 (.1) AT2G28500 139 / 4e-41 AS2 LBD11 LOB domain-containing protein 11 (.1) AT1G65620 136 / 3e-40 AS2 AS2 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024183 [exp] 265 / 2e-90 AT2G30340 230 / 4e-76 LOB domain-containing protein 13 (.1) Lus10034208 [exp] 189 / 1e-60 AT2G30340 201 / 9e-65 LOB domain-containing protein 13 (.1) Lus10029061 [exp] 188 / 2e-60 AT2G30340 201 / 1e-64 LOB domain-containing protein 13 (.1) Lus10018275 [exp] 159 / 2e-49 AT1G31320 243 / 2e-83 LOB domain-containing protein 4 (.1) Lus10040638 [exp] 158 / 5e-49 AT1G31320 244 / 1e-83 LOB domain-containing protein 4 (.1) Lus10031285 [exp] 155 / 1e-47 AT2G30130 226 / 3e-76 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10031191 [exp] 153 / 2e-47 AT1G31320 199 / 2e-66 LOB domain-containing protein 4 (.1) Lus10031769 [exp] 153 / 3e-47 AT1G31320 193 / 8e-64 LOB domain-containing protein 4 (.1) Lus10031855 [exp] 152 / 1e-46 AT2G30130 220 / 4e-74 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G081200 [exp] 234 / 2e-78 AT2G40470 249 / 2e-84 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) Potri.013G156200 [exp] 229 / 2e-76 AT2G40470 207 / 2e-67 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) Potri.019G127300 [exp] 212 / 2e-69 AT2G40470 225 / 1e-74 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) Potri.005G097800 [exp] 164 / 5e-52 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1) Potri.007G066700 [exp] 164 / 6e-52 AT1G31320 216 / 3e-73 LOB domain-containing protein 4 (.1) Potri.001G081400 [exp] 158 / 3e-49 AT1G31320 228 / 3e-77 LOB domain-containing protein 4 (.1) Potri.003G149000 [exp] 157 / 9e-49 AT1G31320 241 / 2e-82 LOB domain-containing protein 4 (.1) Potri.010G184400 [exp] 154 / 1e-47 AT2G30130 227 / 7e-77 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.001G281600 [exp] 152 / 5e-47 AT2G30130 248 / 4e-85 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.008G072800 [exp] 152 / 7e-47 AT2G30130 229 / 8e-78 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain PF05308 [flax] [poplar] Mito_fiss_reg Mitochondrial fission regulator
Representative CDS sequence Show only first row Show all	>Lus10009930 pacid=23150080 polypeptide=Lus10009930 locus=Lus10009930.g ID=Lus10009930.BGIv1.0 annot-version=v1.0 ATGGGGAGGAGATCAGTAGTGATGATGAACATGATTTCTCCTCCAGGAGTATTGAACACCGTCACTCCCTGCGCCGCCTGTAAGCTCCTCCGCCGTCGCT GCGCCGAGGAGTGCCCTTTCTCCCCTTACTTCTCCCCTCACGAGCCCCACAAGTTCGCCGCCGTCCATAAGGTCTTCGGCGCCAGCAACGTCTCCAAGAT GCTCCTCGAGGTGCCGGAGAGCCAGCGGGCGGACGCGGCGAACAGCCTGGTATACGAAGCGAACCTGAGGCTGAGGGATCCGGTGTACGGATGCATGGGA GCAATCTCAGCACTGCAGCAGGAGATTCAGTCCCTTCAGACGGAACTTAACGCCGTCAGGTCTGAGATCCTAAAGTACAAGTACAGAGAGGCCACCACTA GCCTTCTCTCCTCAGCAGCGCACGCTTCTTTGATCTCATCCGGCGTCGTTTCCGTCATTGCACCAACCACCCCTGTTCCGCCGCCGAGGACACCTACTCT TGCTCCTCCACCGCCTCCGCCGCCGCAGCCGTCGATAGTTATATCGTCGTCGTCGTCGTCTACAAATGCTTCTAATAATAATAATAATAATTTATATAGT TCCATTACAGCAAGCGATCGCCACAGCGGTGTTCCTTATTTTGACTAA
AA sequence Show only first row Show all	>Lus10009930 pacid=23150080 polypeptide=Lus10009930 locus=Lus10009930.g ID=Lus10009930.BGIv1.0 annot-version=v1.0 MGRRSVVMMNMISPPGVLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVPESQRADAANSLVYEANLRLRDPVYGCMG AISALQQEIQSLQTELNAVRSEILKYKYREATTSLLSSAAHASLISSGVVSVIAPTTPVPPPRTPTLAPPPPPPPQPSIVISSSSSSTNASNNNNNNLYS SITASDRHSGVPYFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10009930 [exp]	0	1
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10005390 [exp]	2.6	0.9070
AT3G19895			RING/U-box superfamily protein...		Lus10029068 [exp]	3.9	0.8591
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10006626 [exp]	5.3	0.8618
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Lus10022352 [exp]	7.7	0.8909
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10018007 [exp]	9.2	0.8476
AT2G42040			unknown protein		Lus10004164 [exp]	9.3	0.8362
AT2G45290			Transketolase (.1)		Lus10030283 [exp]	9.4	0.8874
AT2G45290			Transketolase (.1)		Lus10000789 [exp]	9.5	0.8838
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10029991 [exp]	10.2	0.8398
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032388 [exp]	10.2	0.8807

Compare expression of checked genes

Lus10009930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.