Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 406 / 1e-140 Peroxidase superfamily protein (.1) AT5G58400 396 / 6e-137 Peroxidase superfamily protein (.1) AT5G58390 353 / 3e-120 Peroxidase superfamily protein (.1) AT1G14550 327 / 6e-110 Peroxidase superfamily protein (.1) AT1G14540 310 / 2e-103 Peroxidase superfamily protein (.1) AT4G36430 296 / 2e-97 Peroxidase superfamily protein (.1) AT1G44970 291 / 2e-95 Peroxidase superfamily protein (.1) AT2G18150 287 / 4e-94 Peroxidase superfamily protein (.1) AT2G18140 283 / 2e-92 Peroxidase superfamily protein (.1) AT5G66390 280 / 2e-91 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030149 [exp] 568 / 0 AT5G05340 405 / 8e-142 Peroxidase superfamily protein (.1) Lus10009934 [exp] 441 / 3e-155 AT5G05340 372 / 5e-130 Peroxidase superfamily protein (.1) Lus10030148 [exp] 440 / 1e-154 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10009933 [exp] 384 / 5e-132 AT5G05340 364 / 2e-126 Peroxidase superfamily protein (.1) Lus10034207 [exp] 383 / 8e-132 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10024209 [exp] 355 / 2e-120 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1) Lus10032786 [exp] 349 / 1e-118 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10006534 [exp] 348 / 4e-118 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10003573 [exp] 347 / 5e-118 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G156500 [exp] 437 / 4e-153 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 403 / 1e-139 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 400 / 4e-138 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 363 / 5e-124 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 360 / 8e-123 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 359 / 2e-122 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.010G236900 [exp] 358 / 6e-122 AT1G14550 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.001G458700 [exp] 353 / 3e-120 AT1G14540 394 / 4e-138 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 353 / 4e-120 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.001G458900 [exp] 348 / 3e-118 AT1G14540 389 / 3e-136 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10009932 pacid=23150136 polypeptide=Lus10009932 locus=Lus10009932.g ID=Lus10009932.BGIv1.0 annot-version=v1.0 ATGGCTGCCGGTAACTCAAATATTTGGCTGCGTTCATGTTTGGTGCTTTTGGTTGCGGTGTGTGGTGCTGGGAAATGTTGGGGTCAGCTCTCCACAGACT TCTATTCAGAGAGCTGCCCTATGCTGATGGACACGGTGAGGTGTGAAGTTGAATCCGCCGTTGACAAGGAAACAAGGATTGCTGCTTCTCTCCTTCGCTT GCACTTCCACGACTGTTTCGTCAACGGTTGTGATGGGTCGATACTGCTGGAAGACACGGATTCGTTCACAGGAGAACAGACTGCTGCACCAAACAACGGA TCCGTGAGAGGATATAACGTCATTGAAGACATTAAGTCAAAAGTTGAGCAAGTATGTCCTGGAGTAGTCTCCTGCGCAGACATCGTCGCCATCGCTGCTC GAGATTCCACCGTCATCGCAGGAGGGCAGAGCTGGGAAGTGAAAGTTGGAAGGAGGGATTCAAAGACAGCCAGTTTTAATGCAGCAAATAGTGGAGTGCT CCCTGCGCCTACATCTTCACTTAACGAGCTCATTAAGAGCTTCGGGGACCAAGGCCTCTCTGCTAACGACATGGTCGTTCTATCCGGATCCCACACCATC GGAGTAGCGAGGTGCGTTTCGTTTAGGGACCGAATCTACAACGAGACCAACATCGACCCTTCATTCGCAAGCCAAAGGCAAGAGAATTGCCCCTTAGCAC CAAACTCAGGCGACGACAACCTGGCCCCACTGGACCTCAAAACGCCGACATCATTCGACAACAACTACTACAACAACCTCATCGAGCAAAAAGGTCTTCT CCACTCCGACCAAGTCCTGTTCAACGGCGGATCAACCGATTCTCTAGTACGATCCTATAGCCAGAGCCCGAAGGCATTCGCTGCAGACTTTGCCGCAGCC ATGGTTAAGATGGGAGACATCAAGCCCCTCACTGGGTCTCAGGGAGAGATCAGGAACGGAAGTGGATCCCACACCATCGGAGTAGCGAGGTGCGTTTCGT TTAGGGACCGAATCTACAACGAGACCAACATCGACCCTTCATTCGCAAGCCAAAGGCAAGAGAATTGCCCCTTAGCACCAAACTCAGGCGACGACAACCT GGCCCCACTGGACCTCAAAACGCCGACATCATTCGACAACAACTACTACAACAACCTCATCGAGCAAAAAGGTCTTCTCCACTCCGACCAAGTCCTGTTC AACGGCGGATCAACCGATTCTCTAGTACGATCCTATAGCCAGAGCCCGAAGGCATTCGCTGCAGACTTTGCCGCAGCCATGGTTAAGATGGGAGACATCA AGCCCCTCACTGGGTCTCAGGGAGAGATCAGGAAAGTATGTAGCAGACCTAACTAA
AA sequence Show only first row Show all	>Lus10009932 pacid=23150136 polypeptide=Lus10009932 locus=Lus10009932.g ID=Lus10009932.BGIv1.0 annot-version=v1.0 MAAGNSNIWLRSCLVLLVAVCGAGKCWGQLSTDFYSESCPMLMDTVRCEVESAVDKETRIAASLLRLHFHDCFVNGCDGSILLEDTDSFTGEQTAAPNNG SVRGYNVIEDIKSKVEQVCPGVVSCADIVAIAARDSTVIAGGQSWEVKVGRRDSKTASFNAANSGVLPAPTSSLNELIKSFGDQGLSANDMVVLSGSHTI GVARCVSFRDRIYNETNIDPSFASQRQENCPLAPNSGDDNLAPLDLKTPTSFDNNYYNNLIEQKGLLHSDQVLFNGGSTDSLVRSYSQSPKAFAADFAAA MVKMGDIKPLTGSQGEIRNGSGSHTIGVARCVSFRDRIYNETNIDPSFASQRQENCPLAPNSGDDNLAPLDLKTPTSFDNNYYNNLIEQKGLLHSDQVLF NGGSTDSLVRSYSQSPKAFAADFAAAMVKMGDIKPLTGSQGEIRKVCSRPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10009932 [exp]	0	1
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Lus10018169 [exp]	1.4	0.8767
AT1G19715			Mannose-binding lectin superfa...		Lus10024291 [exp]	2.4	0.8494
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10019131 [exp]	4.0	0.8269
AT3G62930			Thioredoxin superfamily protei...		Lus10029441 [exp]	4.9	0.8116
AT5G23850			Arabidopsis thaliana protein o...		Lus10037863 [exp]	5.3	0.8105
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10014837 [exp]	6.7	0.8253
AT3G62930			Thioredoxin superfamily protei...		Lus10029440 [exp]	7.2	0.7663
AT5G13825			unknown protein		Lus10001690 [exp]	9.3	0.8302
AT5G03795			Exostosin family protein (.1)		Lus10013790 [exp]	10.4	0.7551
AT2G45040			Matrixin family protein (.1)		Lus10007791 [exp]	12.7	0.7325

Compare expression of checked genes

Lus10009932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.