Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 364 / 2e-126 Peroxidase superfamily protein (.1) AT5G58400 347 / 1e-119 Peroxidase superfamily protein (.1) AT5G58390 335 / 5e-115 Peroxidase superfamily protein (.1) AT1G14550 296 / 7e-100 Peroxidase superfamily protein (.1) AT1G14540 268 / 1e-88 Peroxidase superfamily protein (.1) AT2G18150 253 / 1e-82 Peroxidase superfamily protein (.1) AT4G36430 250 / 1e-81 Peroxidase superfamily protein (.1) AT5G66390 250 / 2e-81 Peroxidase superfamily protein (.1) AT1G44970 247 / 3e-80 Peroxidase superfamily protein (.1) AT2G18140 244 / 3e-79 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030148 [exp] 501 / 0 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10009934 [exp] 427 / 9e-152 AT5G05340 372 / 5e-130 Peroxidase superfamily protein (.1) Lus10030149 [exp] 391 / 2e-136 AT5G05340 405 / 8e-142 Peroxidase superfamily protein (.1) Lus10009932 [exp] 384 / 2e-132 AT5G05340 419 / 6e-146 Peroxidase superfamily protein (.1) Lus10034207 [exp] 355 / 1e-122 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10024209 [exp] 317 / 9e-108 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1) Lus10006534 [exp] 312 / 7e-106 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10000346 [exp] 309 / 2e-103 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10009937 [exp] 305 / 5e-103 AT5G05340 347 / 6e-120 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G156500 [exp] 403 / 1e-141 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 353 / 3e-122 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 353 / 3e-121 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 326 / 1e-111 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 325 / 6e-111 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.010G236900 [exp] 323 / 4e-110 AT1G14550 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.008G022700 [exp] 320 / 6e-109 AT1G14540 404 / 4e-142 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 319 / 9e-109 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.001G458700 [exp] 319 / 1e-108 AT1G14540 394 / 4e-138 Peroxidase superfamily protein (.1) Potri.008G022248 [exp] 318 / 3e-108 AT1G14540 404 / 3e-142 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10009933 pacid=23150079 polypeptide=Lus10009933 locus=Lus10009933.g ID=Lus10009933.BGIv1.0 annot-version=v1.0 ATGTTTGGTGACGGTGGCGGTGGCTTTCCTTGTGTTGCTGGCTGCCGGGAAATGTTCGGCTCAGCTCTCCACGAATTTCTATTCAAAGAGGTGTCCCAAT CTGATGAAGACAGTGAGATCCGCCGTGCAATCCGCCGTCTCCAAGGAAACAAGGGTGGCTGCCTCTCTTATCCGCTTGCATTTCCACGATTGTTTCGTCA ATGTACACAGGGTTGTGATGGATCGATACTGCTGGAAGACACGGCTTCGTTCACAGGAGAACAAACTGCTCTGCCCAACGCAGGATCAGTGAGAGGATTT AACGTAATCAAAGACATAAAGTCCAAGGTTGAGAAAGTCTGCCCAGGCGTCGTCTCCTGTGCCGACATCCTAGCCATCGCTGCTCGAGATTCCACCGCCA TTGCAGGGGGCAAAAGTTGGAAGGTGAGGCTTGGAAGGAGGGATTCCAAAACAGCCAGTTTGGCTGCAGCAAACAGTGGAGTTATCCCTCCCCCTACCGC CACTCTTAACCAACTCATCACTCGCTTCCAAGCCAGAGGCCTCTCCGCTAAGGACATGGTCGTTCTCTCTGGATCCCACACGATTGGACAAGCAAGGTGC GTAACATTCAGGAACAGAATCTACAACGAGACCAACATCGACTCTTCGTTCGCAAGAGCCAGACAGAGCAAGTGCCCCAGGGCTCAAAACTCGGGGAACA ATAATTTGGCCCCATTCGACGTTACGACCCCCAACTTGTTCGACAACAAGTACTACCAGAACCTCATCCAGCAAAAGGGTCTTCTCCACTCCGACCAAGT CTTGTTCAACGGTGGATCGACTGATTCCCTTGTACGATCTTACAGCAGGAAACCAAAGGCCTTCGCCGCGGACTTTGCATCTGCGATGATCAAGATGGGA AATATTAGTCCCCTCACTGGCTCTCAAGGCGAGATCAGGAAGATATGCAGCAGGCCTAACTAA
AA sequence Show only first row Show all	>Lus10009933 pacid=23150079 polypeptide=Lus10009933 locus=Lus10009933.g ID=Lus10009933.BGIv1.0 annot-version=v1.0 MFGDGGGGFPCVAGCREMFGSALHEFLFKEVSQSDEDSEIRRAIRRLQGNKGGCLSYPLAFPRLFRQCTQGCDGSILLEDTASFTGEQTALPNAGSVRGF NVIKDIKSKVEKVCPGVVSCADILAIAARDSTAIAGGKSWKVRLGRRDSKTASLAAANSGVIPPPTATLNQLITRFQARGLSAKDMVVLSGSHTIGQARC VTFRNRIYNETNIDSSFARARQSKCPRAQNSGNNNLAPFDVTTPNLFDNKYYQNLIQQKGLLHSDQVLFNGGSTDSLVRSYSRKPKAFAADFASAMIKMG NISPLTGSQGEIRKICSRPN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10009933 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10009934 [exp]	1.0	0.9907
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10010530 [exp]	2.0	0.9157
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10028791 [exp]	3.5	0.9079
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025412 [exp]	4.5	0.9069
AT3G55050			Protein phosphatase 2C family ...		Lus10015047 [exp]	4.9	0.8979
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036674 [exp]	5.3	0.9075
AT5G24320			Transducin/WD40 repeat-like su...		Lus10022377 [exp]	7.3	0.7760
AT3G12620			Protein phosphatase 2C family ...		Lus10003993 [exp]	7.7	0.8760
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10040708 [exp]	8.0	0.8560
AT1G27040			Major facilitator superfamily ...		Lus10002793 [exp]	9.2	0.8860

Compare expression of checked genes

Lus10009933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.