Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 372 / 7e-130 Peroxidase superfamily protein (.1) AT5G58400 362 / 6e-126 Peroxidase superfamily protein (.1) AT5G58390 338 / 1e-116 Peroxidase superfamily protein (.1) AT1G14550 305 / 2e-103 Peroxidase superfamily protein (.1) AT1G14540 281 / 2e-94 Peroxidase superfamily protein (.1) AT5G06720 267 / 1e-88 ATPA2 peroxidase 2 (.1) AT2G18150 263 / 7e-87 Peroxidase superfamily protein (.1) AT5G06730 263 / 1e-86 Peroxidase superfamily protein (.1) AT4G36430 262 / 1e-86 Peroxidase superfamily protein (.1) AT1G44970 257 / 2e-84 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030148 [exp] 486 / 9e-176 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10009932 [exp] 441 / 5e-155 AT5G05340 419 / 6e-146 Peroxidase superfamily protein (.1) Lus10030149 [exp] 425 / 2e-150 AT5G05340 405 / 8e-142 Peroxidase superfamily protein (.1) Lus10034207 [exp] 365 / 3e-127 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10024209 [exp] 325 / 5e-111 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1) Lus10032786 [exp] 323 / 6e-111 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10003573 [exp] 321 / 4e-110 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10006534 [exp] 317 / 3e-108 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10009898 [exp] 316 / 1e-107 AT1G14550 448 / 1e-159 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G156500 [exp] 419 / 2e-148 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 389 / 8e-137 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 372 / 3e-129 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 340 / 1e-117 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.010G236900 [exp] 339 / 5e-117 AT1G14550 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 339 / 5e-117 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 337 / 3e-116 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.008G022700 [exp] 334 / 3e-115 AT1G14540 404 / 4e-142 Peroxidase superfamily protein (.1) Potri.001G458700 [exp] 333 / 1e-114 AT1G14540 394 / 4e-138 Peroxidase superfamily protein (.1) Potri.008G022232 [exp] 332 / 3e-114 AT1G14550 401 / 6e-141 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10009934 pacid=23150133 polypeptide=Lus10009934 locus=Lus10009934.g ID=Lus10009934.BGIv1.0 annot-version=v1.0 ATGTCTGCCGCCGGTAGTTCAAATATGCTGCGACGTTCATGTTTGGTGACGATTGCGGTGGCTTTCCTTGTGTTGTTGGCTGCCGGGGAATGTTCGGCTC AGCTCTCCACAAATTTCTATTCGAAGAGGTGTCCTCTTCTGATGAAAACAGTGAGATCAGCCGTTCAATCCGCCGTCTCCAAGGAAACAAGGATGGCTGC CTCTCTCATCCGCTTGCATTTCCACGATTGTTTCGTCAATGGTTGTGATGGATCGATACTGCTGGAAGACACGGCTTCGTTCACAGGAGAACAAACTGCT CTGCCCAACGCAGGATCAGTGAGAGGATTTAACGTAATCAAAGACATAAAGTCCAAGGTTGAGAAAGTCTGCCCAGGCGTCGTCTCCTGTGCCGACATCC TAGCCATCGCTGCTCGAGATTCCACCGCCATTGCAGGGGGCAAAAGTTGGAAGGTGAGGCTTGGAAGGAGGGATTCCAAAACAGCCAGTTTGGCTGCAGC AAACAGTGGAGTTATCCCTCCCCCTACCGCCACTCTTAACCAACTCATCACTCGCTTCCAAGCCAGAGGCCTCTCCGCTAAGGACATGGTCGTTCTCTCT GGATCCCACACGATTGGACAAGCAAGGTGCGTAACATTCAGGAACAGAATCTACAACGAGACCAACATCGACTCTTCGTTCGCAAGAGCCAGACAGAGCA AGTGCCCCAGGGCTCAAAACTCGGGGAACAATAATTTGGCCCCATTCGACGTTACGACCCCCAACTTGTTCGACAACAAGTACTACCAGAACCTCATCCA GCAAAAGGGTCTTCTCCACTCTGACCAAGTCTTGTTCAACGGTGGATCGACTGATTCCCTTGGGTTAACATGGTGA
AA sequence Show only first row Show all	>Lus10009934 pacid=23150133 polypeptide=Lus10009934 locus=Lus10009934.g ID=Lus10009934.BGIv1.0 annot-version=v1.0 MSAAGSSNMLRRSCLVTIAVAFLVLLAAGECSAQLSTNFYSKRCPLLMKTVRSAVQSAVSKETRMAASLIRLHFHDCFVNGCDGSILLEDTASFTGEQTA LPNAGSVRGFNVIKDIKSKVEKVCPGVVSCADILAIAARDSTAIAGGKSWKVRLGRRDSKTASLAAANSGVIPPPTATLNQLITRFQARGLSAKDMVVLS GSHTIGQARCVTFRNRIYNETNIDSSFARARQSKCPRAQNSGNNNLAPFDVTTPNLFDNKYYQNLIQQKGLLHSDQVLFNGGSTDSLGLTW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10009934 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10009933 [exp]	1.0	0.9907
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025412 [exp]	1.4	0.9198
AT3G55050			Protein phosphatase 2C family ...		Lus10015047 [exp]	2.8	0.9096
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10010530 [exp]	3.0	0.9102
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10028791 [exp]	3.9	0.9082
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036674 [exp]	6.9	0.9048
AT1G27040			Major facilitator superfamily ...		Lus10002793 [exp]	7.0	0.8973
AT3G13090		ATMRP8, ATABCC6	ATP-binding cassette C6, multi...		Lus10022244 [exp]	7.3	0.7765
AT3G12620			Protein phosphatase 2C family ...		Lus10003993 [exp]	7.9	0.8758
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014402 [exp]	10.6	0.8652

Compare expression of checked genes

Lus10009934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.