Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 327 / 1e-111 Peroxidase superfamily protein (.1) AT5G58400 320 / 8e-109 Peroxidase superfamily protein (.1) AT5G58390 293 / 1e-98 Peroxidase superfamily protein (.1) AT4G36430 289 / 1e-96 Peroxidase superfamily protein (.1) AT2G18150 288 / 2e-96 Peroxidase superfamily protein (.1) AT2G18140 283 / 4e-94 Peroxidase superfamily protein (.1) AT1G14550 282 / 5e-94 Peroxidase superfamily protein (.1) AT5G66390 275 / 4e-91 Peroxidase superfamily protein (.1) AT1G14540 263 / 1e-86 Peroxidase superfamily protein (.1) AT1G44970 263 / 2e-86 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008581 [exp] 430 / 2e-152 AT5G05340 367 / 6e-128 Peroxidase superfamily protein (.1) Lus10009936 [exp] 406 / 9e-143 AT5G05340 361 / 5e-125 Peroxidase superfamily protein (.1) Lus10030145 [exp] 401 / 2e-140 AT5G05340 353 / 2e-121 Peroxidase superfamily protein (.1) Lus10025255 [exp] 331 / 4e-113 AT5G05340 337 / 2e-115 Peroxidase superfamily protein (.1) Lus10006534 [exp] 328 / 6e-112 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10034207 [exp] 328 / 7e-112 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10000346 [exp] 319 / 2e-107 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10030148 [exp] 312 / 3e-106 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10029065 [exp] 309 / 4e-104 AT5G05340 338 / 2e-115 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G156800 [exp] 410 / 2e-144 AT5G05340 345 / 7e-119 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 338 / 6e-116 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.016G132900 [exp] 330 / 4e-113 AT5G05340 350 / 6e-121 Peroxidase superfamily protein (.1) Potri.006G107000 [exp] 323 / 5e-110 AT5G05340 349 / 2e-120 Peroxidase superfamily protein (.1) Potri.016G132800 [exp] 322 / 7e-110 AT5G05340 336 / 3e-115 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 320 / 1e-108 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 312 / 4e-106 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 312 / 6e-106 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 300 / 3e-100 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.007G019300 [exp] 290 / 5e-97 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10009935 pacid=23150081 polypeptide=Lus10009935 locus=Lus10009935.g ID=Lus10009935.BGIv1.0 annot-version=v1.0 ATGGCTGCTCTGCGGGACTTCTCGCTTGCGGTTGCTTTTCTGATGGCAGTTGCAGCAGCAGCACAAGCACAACTCACTCCTGATTTCTACAAAACAAGTT GCCCCCAGGCCCTCCCTGCAATTCGAAAGATTGTTAGGCAAGAAATAAAAAAGGAGACTCGAATGGGCGCTTCCCTCCTCCGATTGCACTTCCACGACTG CTTTGTCAATGGTTGTGACGGCTCCATACTACTGGACGACACTGCCAATTTTACCGGAGAGAAGACGGCAGCTCCTAACGTAAACTCCGTGAGAGGGTTT GAAGTTATCGACAAAATCAAGTCGGAAGTTAACAGAAAATGCAAGGCTAATGTCGTCTCCTGCGCTGACATCTTAGCCGTTGCTGCTCGTGACTCTGTCT CGATCATGGGAGGTCAAAGTTACTTCTACCAAGTTCCCTTAGGAAGAAGAGACGCCAGAACAGCCAGCCGCGCAGCCGCGAACAACAGCCTCCCGCCGCC GACGTTCAACTTCTCGCAGCTAATCTCCAACTTCCAATCCCACGGCCTCAACCTCACCGATCTCGTGGCGCTTTCGGGAGGACACACAATCGGCGTGTCT CGCTGCGTCAATTTCCGAAACCGGATCTACAACGAGACGTCCAACAGCATTCAGCCCCAATTCGCTTCCTCTTTGCAGCGTAACTGCCCGGCCGCCGCCG GAAGCGGGGACAACAACACCCAGGGTCTCGACCAGACTCCAGAGGGATTCGACGTCCAGTACTTCAGGTCGTTGATTCAGTCGAGGGGGCTCCTGCATTC CGATCAGGAGCTGTTCGGGAAAGGTAATAGTGCGAGCGACGTGCTGGTGAGGATGTACGGCAGTAATCCGGGGAGGTTCGCGGCGGATTTTGCAGCGTCG ATGGTTAAGATGGGGAATATGAAGCCACTTACCGGGAATAATGGGGAGATCAGAAAGAATTGTCGCATCGTTAATTAA
AA sequence Show only first row Show all	>Lus10009935 pacid=23150081 polypeptide=Lus10009935 locus=Lus10009935.g ID=Lus10009935.BGIv1.0 annot-version=v1.0 MAALRDFSLAVAFLMAVAAAAQAQLTPDFYKTSCPQALPAIRKIVRQEIKKETRMGASLLRLHFHDCFVNGCDGSILLDDTANFTGEKTAAPNVNSVRGF EVIDKIKSEVNRKCKANVVSCADILAVAARDSVSIMGGQSYFYQVPLGRRDARTASRAAANNSLPPPTFNFSQLISNFQSHGLNLTDLVALSGGHTIGVS RCVNFRNRIYNETSNSIQPQFASSLQRNCPAAAGSGDNNTQGLDQTPEGFDVQYFRSLIQSRGLLHSDQELFGKGNSASDVLVRMYGSNPGRFAADFAAS MVKMGNMKPLTGNNGEIRKNCRIVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10009935 [exp]	0	1
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10021904 [exp]	15.3	0.8944
AT2G45220			Plant invertase/pectin methyle...		Lus10006103 [exp]	15.8	0.8108
					Lus10014263 [exp]	16.7	0.8652
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10043142 [exp]	19.4	0.8722
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10038959 [exp]	21.2	0.8895
AT2G43870			Pectin lyase-like superfamily ...		Lus10002126 [exp]	27.5	0.8535
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027426 [exp]	29.4	0.8805
AT1G61050			alpha 1,4-glycosyltransferase ...		Lus10011206 [exp]	30.2	0.8748
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10024495 [exp]	38.0	0.8739
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10035970 [exp]	44.4	0.7857

Compare expression of checked genes

Lus10009935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.