Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 337 / 9e-116 Peroxidase superfamily protein (.1) AT5G58400 294 / 1e-98 Peroxidase superfamily protein (.1) AT5G58390 283 / 8e-95 Peroxidase superfamily protein (.1) AT2G18150 284 / 1e-94 Peroxidase superfamily protein (.1) AT4G36430 284 / 1e-94 Peroxidase superfamily protein (.1) AT1G14550 282 / 3e-94 Peroxidase superfamily protein (.1) AT5G06720 281 / 1e-93 ATPA2 peroxidase 2 (.1) AT1G14540 280 / 1e-93 Peroxidase superfamily protein (.1) AT5G06730 280 / 6e-93 Peroxidase superfamily protein (.1) AT5G66390 278 / 4e-92 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030145 [exp] 587 / 0 AT5G05340 353 / 2e-121 Peroxidase superfamily protein (.1) Lus10008581 [exp] 400 / 8e-141 AT5G05340 367 / 6e-128 Peroxidase superfamily protein (.1) Lus10009935 [exp] 398 / 9e-140 AT5G05340 358 / 9e-124 Peroxidase superfamily protein (.1) Lus10006534 [exp] 342 / 1e-117 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10000346 [exp] 338 / 6e-115 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10034207 [exp] 335 / 6e-115 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10032786 [exp] 326 / 2e-111 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10025255 [exp] 326 / 4e-111 AT5G05340 337 / 2e-115 Peroxidase superfamily protein (.1) Lus10003573 [exp] 320 / 2e-109 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G156800 [exp] 399 / 3e-140 AT5G05340 345 / 7e-119 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 359 / 3e-124 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.006G107000 [exp] 349 / 2e-120 AT5G05340 349 / 2e-120 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 347 / 8e-120 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.016G132900 [exp] 337 / 1e-115 AT5G05340 350 / 6e-121 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 337 / 1e-115 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.016G132800 [exp] 336 / 2e-115 AT5G05340 336 / 3e-115 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 329 / 1e-112 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 313 / 8e-106 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 301 / 8e-102 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10009936 pacid=23150109 polypeptide=Lus10009936 locus=Lus10009936.g ID=Lus10009936.BGIv1.0 annot-version=v1.0 ATGGCAGCTTCCAAAGCTTTCCTCACGCTTGCAGTATCAGCTTTCTTCCTCATCCAAGCTATTTCTGGACAACTAACGTCGAACTTTTACGAAACTATTT GCCCCGAAGCTTTGCCCACGATAAAAAGGGTAGTGAACAAGGCTATCAGAGATGAACCTCGCATGGGTGCATCACTGCTTCGTTTGCACTTCCATGACTG CTTCGTCAATGGGTGCGACGGGTCAATTCTTTTGGACGACACATCAAGCTTTACTGGGGAGAAAACTGCTGCTCCGAATTTGAACTCGGTTAGAGGGTTT GATGTCGTTGACAGAATCAAGTCTGCAGTTGACAAAGCATGCAAAGGCAGTGTCGTCTCTTGCGCTGACATCTTAGCTGTCGCTGCTCGTGATTCTGTCT CTTTGTTGGGTGGCCCACAATTCTGGTACCAAGTCCTAGTAGGAAGAAGAGACGCCAAGACAGCCAGCATCTCCGCAGCAAACAACAACCTCCCGCTCCC ATTCTTCAGCTTCTCGCAACTCCTCTCAAGCTTCCAAGCCCAAGGCCTCGACCTCGCCGACCTAGTCGCGCTCTCCGGCGGCCATACCATCGGGCTAGCT CGGTGCACCACTTTTCGCGCCCACATCTACAACGACACCAACATCCACCCCAAGTTGGCCGCCACCTTACAGAAGTCCTGCCCTCCTACCGGCGGCGACA ACAACCTCAAGCCTCTTGATTCGACTCCGTCCCGGTTCAATACCGACTACTACAGTGAGCTTGTCCGGAACAGAGGGCTTCTACACTCCGACCAGGAACT GTTTGGAACTGGGAACAGTGCCAGCGACAAGCTTGTGATGACCTACAGTAGTAATCCGACGAAGTTCGCGGCGGATTTTGCGACGTCGATGGTCAAGATG GGGAATCTTCAGGTTGTTACTGGGAGTGCTGGAGAGGTCAGGAACAACTGTCGCGTCGTTAATTGA
AA sequence Show only first row Show all	>Lus10009936 pacid=23150109 polypeptide=Lus10009936 locus=Lus10009936.g ID=Lus10009936.BGIv1.0 annot-version=v1.0 MAASKAFLTLAVSAFFLIQAISGQLTSNFYETICPEALPTIKRVVNKAIRDEPRMGASLLRLHFHDCFVNGCDGSILLDDTSSFTGEKTAAPNLNSVRGF DVVDRIKSAVDKACKGSVVSCADILAVAARDSVSLLGGPQFWYQVLVGRRDAKTASISAANNNLPLPFFSFSQLLSSFQAQGLDLADLVALSGGHTIGLA RCTTFRAHIYNDTNIHPKLAATLQKSCPPTGGDNNLKPLDSTPSRFNTDYYSELVRNRGLLHSDQELFGTGNSASDKLVMTYSSNPTKFAADFATSMVKM GNLQVVTGSAGEVRNNCRVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10009936 [exp]	0	1
AT1G22900			Disease resistance-responsive ...		Lus10021083 [exp]	2.8	0.7601
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10019030 [exp]	5.7	0.7865
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10031234 [exp]	9.0	0.7823
					Lus10035602 [exp]	11.2	0.7623
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10017022 [exp]	11.7	0.7432
AT1G68630			PLAC8 family protein (.1)		Lus10008890 [exp]	12.4	0.7508
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10036880 [exp]	14.1	0.7431
AT5G38200			Class I glutamine amidotransfe...		Lus10035996 [exp]	15.5	0.7856
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10021345 [exp]	16.4	0.7333
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10010920 [exp]	17.0	0.7473

Compare expression of checked genes

Lus10009936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.