Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 298 / 2e-100 Peroxidase superfamily protein (.1) AT5G58400 266 / 7e-88 Peroxidase superfamily protein (.1) AT5G58390 254 / 3e-83 Peroxidase superfamily protein (.1) AT1G14540 251 / 2e-82 Peroxidase superfamily protein (.1) AT1G14550 251 / 5e-82 Peroxidase superfamily protein (.1) AT4G36430 243 / 5e-79 Peroxidase superfamily protein (.1) AT5G06720 240 / 1e-77 ATPA2 peroxidase 2 (.1) AT2G18140 237 / 2e-76 Peroxidase superfamily protein (.1) AT2G18150 236 / 5e-76 Peroxidase superfamily protein (.1) AT1G44970 229 / 6e-73 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034207 [exp] 294 / 7e-99 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10024209 [exp] 294 / 1e-98 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1) Lus10009898 [exp] 281 / 7e-94 AT1G14550 448 / 1e-159 Peroxidase superfamily protein (.1) Lus10009900 [exp] 281 / 1e-93 AT1G14550 436 / 1e-154 Peroxidase superfamily protein (.1) Lus10006534 [exp] 280 / 2e-93 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10009902 [exp] 280 / 4e-93 AT1G14550 441 / 8e-157 Peroxidase superfamily protein (.1) Lus10024208 [exp] 274 / 4e-91 AT1G14550 442 / 3e-157 Peroxidase superfamily protein (.1) Lus10030148 [exp] 267 / 9e-89 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10000346 [exp] 269 / 5e-88 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154400 [exp] 347 / 1e-119 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 306 / 7e-104 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.016G132700 [exp] 301 / 7e-102 AT5G05340 367 / 2e-127 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 297 / 3e-100 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.001G458700 [exp] 289 / 5e-97 AT1G14540 394 / 4e-138 Peroxidase superfamily protein (.1) Potri.001G458900 [exp] 289 / 7e-97 AT1G14540 389 / 3e-136 Peroxidase superfamily protein (.1) Potri.010G236910 [exp] 288 / 1e-96 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236850 [exp] 288 / 1e-96 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 281 / 9e-94 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.016G132800 [exp] 280 / 2e-93 AT5G05340 336 / 3e-115 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10009937 pacid=23150143 polypeptide=Lus10009937 locus=Lus10009937.g ID=Lus10009937.BGIv1.0 annot-version=v1.0 ATGGCATATGGACTTCTTTACTGCGCGATGCTTGTGTTTGTTGCCGGAGGATCGTACGGGCAAGAACTGGCGTCGAATTACTACGACATAAGTTGCCCAA AGGCTCTATCAGTGATTCGGAGTTCGGTGTTGGGTGCCGTCCATAAGGACCGTCGGATGGGAGCTTCTCTGCTACTTTCATGGTTTAATGAAATGCAGGG ATGTGATGGGTCGGTTTTGTTGGACGACACGGGGAGCTTCACCGGAGAAAAGACGGCGGGGCCGAACATGAACTCTTTGAGAGGGTTCGAAGTGATAGAC AACATCAAGTCACAGGTGGAGTCGGTTTGTCCTGGAGTTGTTTCCTGCGCTGATATCCTCACTGTCGCTGCTAGAGATTCTGTTGTGGCTTTGGGAGGCC CATCGTGGAATGTCCAACTGGGAAGACGAGATTCAACGACGGCAAGCTACACCGCCGCAAACACAAACCTTCCATCTCCATCCTTGGACCTCCCTGACCT CATCTCTTCCTTTACCAACAAAGGATTCACCGTCAAACAAATGGTCGCCCTCTCCGGGTCCCACACAATCGGCCACGCCAGGTGCCTCGTTTTCCGCAAC CGGATCCATGGACCCGGTTCGGATATCGAATCTGCATTTGCGGAGTCGCTCAAGTCAACCTGCCCACCTCTCACGGGCAACAACGACACATTGTCACCCT TAGACGCCACATCTCCTTCCTTCTTCGACAACGCCTACTTCACTAACCTGGTTTCCAAACAGGGTCTCTTGCACTCTGATCAGCAGTTGTTCAGCGGTGG GTCCACTGACGCCCACGTCACCGATTACGCAAAACGTCCTCGTGCTTTCCAAGCCGATTTCGCTGCTGCCATGGTGAAGATGGGTGGACTCGGGACGCTG ACCGGAACGGAAGGTGAGGTTCGAGCCAACTGCCGCAGAATAAACTGA
AA sequence Show only first row Show all	>Lus10009937 pacid=23150143 polypeptide=Lus10009937 locus=Lus10009937.g ID=Lus10009937.BGIv1.0 annot-version=v1.0 MAYGLLYCAMLVFVAGGSYGQELASNYYDISCPKALSVIRSSVLGAVHKDRRMGASLLLSWFNEMQGCDGSVLLDDTGSFTGEKTAGPNMNSLRGFEVID NIKSQVESVCPGVVSCADILTVAARDSVVALGGPSWNVQLGRRDSTTASYTAANTNLPSPSLDLPDLISSFTNKGFTVKQMVALSGSHTIGHARCLVFRN RIHGPGSDIESAFAESLKSTCPPLTGNNDTLSPLDATSPSFFDNAYFTNLVSKQGLLHSDQQLFSGGSTDAHVTDYAKRPRAFQADFAAAMVKMGGLGTL TGTEGEVRANCRRIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10009937 [exp]	0	1
AT1G17860			Kunitz family trypsin and prot...		Lus10039209 [exp]	2.4	0.9683
AT1G13090		CYP71B28	"cytochrome P450, family 71, s...		Lus10002670 [exp]	4.6	0.9422
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Lus10037818 [exp]	7.6	0.9496
AT1G17860			Kunitz family trypsin and prot...		Lus10007889 [exp]	13.2	0.9228
AT1G17860			Kunitz family trypsin and prot...		Lus10013730 [exp]	16.0	0.9399
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011202 [exp]	24.3	0.9224
AT5G40690			unknown protein		Lus10010488 [exp]	27.2	0.9417
					Lus10040377 [exp]	27.5	0.9174
AT1G17860			Kunitz family trypsin and prot...		Lus10007890 [exp]	29.3	0.9353
AT4G19880			Glutathione S-transferase fami...		Lus10036209 [exp]	34.9	0.9363

Compare expression of checked genes

Lus10009937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.