Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33840 290 / 6e-98 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1) AT1G28350 282 / 6e-91 Nucleotidylyl transferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029613 [exp] 338 / 7e-114 AT2G33840 599 / 0.0 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1) Lus10032773 [exp] 326 / 7e-112 AT2G33840 598 / 0.0 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1) Lus10030144 [exp] 72 / 1e-15 AT2G33840 57 / 3e-10 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G248900 [exp] 306 / 2e-104 AT2G33840 602 / 0.0 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1) Potri.008G010201 [exp] 166 / 1e-50 AT2G33840 462 / 2e-164 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00579 [flax] [poplar] tRNA-synt_1b tRNA synthetases class I (W and Y)
Representative CDS sequence Show only first row Show all	>Lus10009938 pacid=23150124 polypeptide=Lus10009938 locus=Lus10009938.g ID=Lus10009938.BGIv1.0 annot-version=v1.0 ATGGGTGGTAGGGGAGACTTGATTGAGATATGGAATGCTGTTGGAATGGACCTCGAGGCTGGAAATGTGGAGTTCCTCTGGTCTTCAGATGAAATTAATT CCCGTGCTGACGAGTACTGGCCGCTTGTATTGGATATAATTTGTAAGAACACGCTTTCTAGAATAACAAGGTGTGGTCAAATCATGGGTCGGAATGAGAA GGACGAGTTGACAGCTGCTCAGATTTTCTACCCTAATGCAATTGCAGACATGTTTCCTGGTTTACAGGAAGGACAAGAAAAGATGTCAAAAAGCAACCCC TCTTCTTCTATTTTTATGGAGGATGAAGAGGTAGAAGTAAATGTGAAGATAGAGAAGGCATTTTGTCCTCGTAAGGTTGTTCAGGGGAATCCATGCCTGG AGTACATCAAGTTTATTGTTTTGCCTTGGTTTAATGAATTCACTGTGGAGCGTGATCCGAAAAAGGGTGGAAATAAGACCTTCACAAACTTTGATGATCT TGTGGCGGACTATGAAAGTGGGGCGTTGCATCCTTGTGATCTGAAACCTGCTTTGTCAGAAGCATTAAACAAGATCCTGCAGCCTGTTCGAGATCACTTC AACCAAAATGCCAGGGCCAAGGATCTCTTAGAACGCGTCAAAGTATATCTTATTTCCAGCACTTGA
AA sequence Show only first row Show all	>Lus10009938 pacid=23150124 polypeptide=Lus10009938 locus=Lus10009938.g ID=Lus10009938.BGIv1.0 annot-version=v1.0 MGGRGDLIEIWNAVGMDLEAGNVEFLWSSDEINSRADEYWPLVLDIICKNTLSRITRCGQIMGRNEKDELTAAQIFYPNAIADMFPGLQEGQEKMSKSNP SSSIFMEDEEVEVNVKIEKAFCPRKVVQGNPCLEYIKFIVLPWFNEFTVERDPKKGGNKTFTNFDDLVADYESGALHPCDLKPALSEALNKILQPVRDHF NQNARAKDLLERVKVYLISST

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28350			Nucleotidylyl transferase supe...		Lus10009938 [exp]	0	1
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10016334 [exp]	9.8	0.8861
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10002750 [exp]	12.6	0.8792
AT4G12840			Protein of unknown function (D...		Lus10008748 [exp]	35.3	0.8280
AT4G03240		ATFH, FH	frataxin homolog (.1)		Lus10039728 [exp]	44.2	0.8062
AT1G21390		EMB2170	embryo defective 2170 (.1)		Lus10019210 [exp]	48.4	0.8579
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10006405 [exp]	53.8	0.8622
AT5G23750			Remorin family protein (.1.2)		Lus10008477 [exp]	77.7	0.8266
AT1G11310		PMR2, ATMLO2, M...	POWDERY MILDEW RESISTANT 2, MI...		Lus10011630 [exp]	78.9	0.8519
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10016749 [exp]	80.0	0.8257
					Lus10023665 [exp]	80.8	0.8425

Compare expression of checked genes

Lus10009938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.