Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79280 1410 / 0 AtTPR, NUA TRANSLOCATED PROMOTER REGION, nuclear pore anchor (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030142 [exp] 2784 / 0 AT1G79280 1484 / 0.0 TRANSLOCATED PROMOTER REGION, nuclear pore anchor (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G080900 [exp] 1732 / 0 AT1G79280 1751 / 0.0 TRANSLOCATED PROMOTER REGION, nuclear pore anchor (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07926 [flax] [poplar] TPR_MLP1_2 TPR/MLP1/MLP2-like protein
Representative CDS sequence Show only first row Show all	>Lus10009940 pacid=23150088 polypeptide=Lus10009940 locus=Lus10009940.g ID=Lus10009940.BGIv1.0 annot-version=v1.0 ATGCACCGTACGTCGCTGCTAGGGCTGACGAGTACATCCGATGCTTGCAGACGGAGTTTGATACCGTGCTTGCAGACGGAGTTTGGTACCGTCAAGGCTG CCGCAGATGCCAACGGCGTCACCGCTGAGCAGACTTGTTCGCTTCTCGAACACAAGTTTTTGTCTCTGTCCGCCGAGTTCTCTACGCTGCAGTCCCAGAA CGCCCAGCTTCAGTCCTCGTTCGATGAGCGACTCTCGGAACTCGCCGACGTCCAGACTCAGAAGCACCAGCTTCACTTGCAATCGATGGAAAAGGATGGT GAAATAGAGAGGCTGACAACGGAGCTTTCAGAGCTGCGTAAAACTAACAGGCAGTTGATGGAGTTGGTGGAACAAAAAGATGCGGAAATCAGCGATAAGA AAGTTACTATTAACAGCTATCTCGATAAGATTGTTAATTTGACGGAGAGTGCATCAAAAAAGGAAGCCCGTTTAAGTGAAGTTGAAGCAGAGCTGTTGCG ATCTCAGGCCCTCTGTTCTCGCCTTTCACAGGCTGAGAAACAACTGGGTGAATGCTCAAGCTCCGCGAAGAGAAAAATGGAGAGGGTAGAGGAACTCGAA GCGAAGTTAACCTCCTTGCAAGAGGAATTATGCTCTACCAAGGATGGTGCTTTAGCAAATGAAGAGCAGTTTTTGGCTGAACTGACTACTGCTAATAAAC TAATTGAGCTCTATAAGCAAAGTTCTGAGGAATGGTCACAAAAAGCTGGAGAGCTTGAAGGTGTGATTAGAGCTTTAGAGAAACACTTGAGTGAGCTTGA TACTGATTACAAAGCAAGACTTGAAAAAGAAATACTTTCGAGAAGAGAATTAGAGAAGGAAGCTGCTGATCTCAGAAGTAGACTTGAACAATGTGAAGCT GAGATGGAAACCAACAGAAAGAATAATGAGCTTAATCTACTTCCACTCAGTAGTTTTTCAACAGAAAGGTGGAAGTCACAGTCTGATGGTAATGATACTA TGGAAGTTACTGACATGCTCATCCCCAAGATACCTCCTGGTGTTTCTGGGACTGCATTGGCAGCTTCTTTACTTCGCGATGGATGGAGTTTGGTCAAGAT GTATGCGAAGTATCAAGAAGCAAATGATGCTTTTCTTCATGAACAACTAGGAAGGAAGGAATCTGAAGCTGTGTTGCAGCGGGTCCTGTTTGAACTGGAG GAGAAAGCGGGAGTCATTTTGGAAGAAAGAGCGGATTATGAGAGAATGGTCGAATCATACTCTATTATGGAGAAAAGGCTGCAACAATCATTGTCTGAAC AGGGCAATCTGGAGAGAATGATCCAACAGTCAAAGGCTGAACTAAGAAGGCATGAGCGACAGTATGATTATGCTCAGAAGGATATTGTTGACCTTCAGAA GCAGATTACAATTCTTCTAAAGGAATGTCGTGATGTGCAACTACGATGTGGATTGGGGGATAATGCAGATGATGATTTTCCGGTACATGGTGCTGTTGGT ATGGAGACAGACACTGTTGAGGATAATGTTCTTTCTGAAAGGCTTTTGACTTTCAAGGACATAAATGGATTAGTTGAGCAGAATGTGCAACTGAGGAGTC TCGTGCGAAGTCTTTCAGATCAGATTGAGAATAATGAGGAGGAGTTCAAGGTGAAATTGGACATGGAACTCAAAAAAAAAACTGATGAAGCGGCTTCTAG AGTTGCTATAGTCTTACAAAGGGCAGAAGAACAAGGGCAGATGATTGAATCTCTTCATACAGCTGTTGCTATGTATAGAAGGTTATATGAGGAAGAACAG AAACGTCATTCGCCTAATTCTCGTCCGCATTCATTGGAGGAAGCTTCAGAGGATGCGAGGGGGGATCTTTTGGTTCTACTTGAGGGTACTCAGGAAGCTA GCAAGAAGGCCCAGGAAAAGGTAGCTGAGCAGCTGGGATCGCTTGAGGAAAAGCTATCAAAATATAGGAGTGACATTGTGTCGCTGCAATTGGAGCGTGA CAAGTTGGCTTCAGAGGCAAAACTTGCGGTAGAAAAACTTGAGAGATTTATGAAAGAATTCGAACATCAGAACACTCAGATCCACGGTCTTCAAGATGGA AATTTGGAGTACTCGCGCCTTATTCTCGACTTTCAGAAGAGGTTAAATGAAAGTATGCATGCTCAAAATGCTTCCGAGGATCATTGTCGGAGGTTGAACA TGGAGGTGTCGACCCTAAAGCACGAGAAGGAAATGTTATCAAATGCTGAAAAGAGAGCATGTGATGAAGTTGGTAGATTGTCAGAGAGGGTGCACAGGCT GCAGTCTAGCTTAGGCACTTTGCAGAGTGCTGAGGAGGTTCGGGAGGAAGCAAGGGCTGCCGAGAGGAGAAAACAGGAGGAACATGTTCAACAAATTGAG AGGGAATGGGTGTTGGCGAAAAAAGAGCTCGAACTGGAGAAGGACAATGTCAGGGCCCTCACATGTGGTCGTGAGCAGATTTTGAAGGATGCAATGAAAC AAGTGGGTGAGATTGGAAAAGAGTTAGCTAATGCGTTAGGTGCAGTAACAGTCGCTGAGACCAGGGCTGCTGTTGCTGAGACTAAAGTTGAGGATTTGGA GAAGAAGCTCAGGATTTCAAATCAAAAGGCCGCCACTGATTTGATTATGCTGAAGGAGGAGTTAGAAAAGTTGAGACAAGAGGCACAAACTAATAAGGAC TACATGGTGCAGTATAAGAATATAGCTGAGGTAAATGAAGATGCACTGAAGCAAATGGAAGCTGCTCATGAGAACTTCAAGAGAAAGTCAGAAAAGCTCA AAGAGTCTTTGGAAGCTGAGTTGATTGCACTAAGAGGGAAGATATCTGAACTTGAAAATGAATTGCGTTTGAAGTCTGAGGAAGTAGTTGCCCTTGCTGC TGGTAATGGAGAAACTCTTACCTCTGCTCTGGCTGAAGTTACTGCCTTGAAGGAGGAAGCTTCGAATAAAATGTCTCAAACTGCTGCATTGGAAATGCAA GTTTCGGTATTGAAAGTGGATCTTGAGAAGGAGCATGACCGATGGCGATCTGCTCAAAATAATTACGAGAGACAGGTCATTTTACAATCTGAGACAATTC AGGAGTTAACTAGGACATCGCAGACTTTGGCATCATTACAAGAAGAAGCAACTACCTTGCGTAAATTGGCCGATGAGCGAGAACTCGGAAATAATGAGTT GAAAGCCAAGTGGGAGGCTGCACAATCAATGCTAGAAGAATCAAGGAGGGAATCTCAGAAGAAATATGACGAGCTCAATGAACAGAATAAAGTACTGCAC GACAGACTGGAGGCTCTGCACATCAAGTTTGCTGAGAGTCACCGCAGCTCTGCTGGAGTGTCTTCTAGAAACGGTGTTGATTCAAGCGATGATGGAGGAT TGCAGAAAGTTGTTGGCTATCTTCGACGATCCAAGGAGATGGCAGAGACAGAGAGGGCTTTATTAAAGCAGGAAAATTCTCGATTGAAATCACAACTTGA TAATGCTCTCAAGGCAGCTGAAAATGCTAAAGTTTCACTCGGTGCTGAGCGTGCAAACACGAGGGCATTAATTTTTTCAGAGGAAGAAATGCAATCTCTT CAGAATCAGGTTATGGAGATGAACTTGTTACGTGGGAACAATATGCAACTTATAGAAGAGAACAAGCAGAATGTTGAGGAATGTCAGAAATTGCGTGATT TAGCACAAGAGAGTGATGCCAAGGCTGAAGAACTGAAACTTCTACTGAGGGAGAAAGAAAAGGAAATCGATGCTTGCAAGAAAGAATTAGAAATGTTAAG GGCGGATAAAGTTTTTTTGGATAATAAGATATCTGAAAAGAATAATGAGTTGGAGGAGGCCAAGAACTGCATGTTGAAGCAGCAAGAGACCCTGTCGAAG TTGGAGCATGATCTTGGAAGAAGTGAAGTAGAGCTGAAACAAAGAAGTAACGATCTTCTGGAAGCAGAGGCTAACATAAAGAGTGAATTAGAAAGGCAGA AGAGGCAATTCACTCTTAACAGGAGAAAATTGGACAATTTAACGAAGCAAAGGGATGAGTTAATCAAAGAAAAGAATGCAGCTAACAAACAGATTGAAGA ACTAAAGCAAGCGAAGAAGGCCATTGGCAATGTTGGTGGTGAGCACTCCCATAAGGAAAAGGAAGACAAAACAAGATTACAGATACTGGAAAAAACAGTG GAGAAGCGAAGAGAGGAGTTGAAGAAAGCAAAAGATGAGTTGAGGAAGGAAAAGGAGGATCATCAAATGGAGAAATCGAAGTTTGCGGACATATATGATA AAAGTAGGGAGGCCCTGAGGCGCGTTTTGGATGCACTAGAAAAGCTTAAGCACGTTGAGGATGCTCTCCCTGAGTTTCTTTCTGGAAGCGTTTTGGATGA TCTCATTGCTGTTTGCACATCAGCCATTGAGATTTTTGGGAAAGAAGTGAATTCGTTGCTGGGTGACCTTGGGCAAAGCACACCCTCAGTAGAGACTCCA TCTCTGGATGCTCCTGCACCAGTTTCAGCTAGTGAAACAACTTCTCAAATTCCTCTCATCCCAGCTGCTTCTGCCTCTCAAGCTGCTGGAAAAGCTGCTG AAGAGAGGGAGAAAAGATTCTCAGCTCCCCAGATAAATGCCTCCGAAGGTCGTAAAACAGCAAGAAGGTTGGTGAGGCCCAGTTTTTCCAAGACAGAGGA ACCTCAGGGTGATGCAGAGATATCTGAGGCAGATGGATCCAGCGTTGAGGCGAAACCTGCTGTGTTGCAAGATTCTGAAATGCAACCTAACCCAACTGTG TCGTTTCAGCCACTCAGTCGTAAACGATCTTTACAGTCTGGTATAGAGAGCAGTGAGCAACAAATCAATCAGGGGGACGCAGTTCCCCAGGGAGCTGTCC AGATGCCGAAGAAGGCAAAATTACAGGAATCCGCAGATGGAGAGGTGGAAGTAGAGCCTAATACATCAGCAGTTGACCTTACGCTGGATTCCACTAGTGA TGTAATTCCTGATGGACTCGTTTCTGAAAAAGAAGATGCGGACGTAATTACTGGGAAAAAGATGGAGGCTTCAAAGGATGCAGCAGAGGATGTAGGTGAA GAAGAGATTCAGAAAACTGATATTTCAGAGAAGCCGAGTGGAACCGGGATGGAGATTGACGAGAGCTTGAAGGATGAGATGGTAGAGGAGGACCAACAAC CGATATTGGAGTCTGATGGTGACCGAGAAGAGGGAGAGATGCTACCAGATGTCTCAGAAGTGGAAGTGTCCAATACGGCAGACAGCCCCGAAAGTGGCGA GTTTGTACCCGAGACAACACCCGAGGGGTCGCCATTGAAGATGGAAGATGAAACCAACTCCCCCCTAAATGCTCCCAACGATGAAGCTGACATCACGGTT GAGGATACCGGTGAAGGTTCGGAGAAGGCAAATGACATTGGCGAGCCGAATGTGGTGGAAACTGACCCGATTCTTGAAAGTCCGCCAGTTGTCGGGGACA GTACAACTAAGCCGAGTGCAGAAGTAGTTACCGTTGTGAAACCAAGAAGTCCTTGCGCAATCACGGCGGAGGAGGTTAAGCACCCAACACCAACTCTCGT TAATTTGACGGATAGAGCAAGGCAGAATGCTGAGAAAAGACTACAAAGACCTGCACCAACACAACCCAATGCATCGCCGCCGCCCTCAATCCCAGGCAAT AGAGGTCGAGCCAGAGGAGGATCAGTACGTGGTCGCGGTGTTCAAAGAACTTTTCGTGGAGGCCGGACTGGGCGAGGTGGCCCGTCTCCTGGCCAACCAG GTCAAGGCTAA
AA sequence Show only first row Show all	>Lus10009940 pacid=23150088 polypeptide=Lus10009940 locus=Lus10009940.g ID=Lus10009940.BGIv1.0 annot-version=v1.0 MHRTSLLGLTSTSDACRRSLIPCLQTEFGTVKAAADANGVTAEQTCSLLEHKFLSLSAEFSTLQSQNAQLQSSFDERLSELADVQTQKHQLHLQSMEKDG EIERLTTELSELRKTNRQLMELVEQKDAEISDKKVTINSYLDKIVNLTESASKKEARLSEVEAELLRSQALCSRLSQAEKQLGECSSSAKRKMERVEELE AKLTSLQEELCSTKDGALANEEQFLAELTTANKLIELYKQSSEEWSQKAGELEGVIRALEKHLSELDTDYKARLEKEILSRRELEKEAADLRSRLEQCEA EMETNRKNNELNLLPLSSFSTERWKSQSDGNDTMEVTDMLIPKIPPGVSGTALAASLLRDGWSLVKMYAKYQEANDAFLHEQLGRKESEAVLQRVLFELE EKAGVILEERADYERMVESYSIMEKRLQQSLSEQGNLERMIQQSKAELRRHERQYDYAQKDIVDLQKQITILLKECRDVQLRCGLGDNADDDFPVHGAVG METDTVEDNVLSERLLTFKDINGLVEQNVQLRSLVRSLSDQIENNEEEFKVKLDMELKKKTDEAASRVAIVLQRAEEQGQMIESLHTAVAMYRRLYEEEQ KRHSPNSRPHSLEEASEDARGDLLVLLEGTQEASKKAQEKVAEQLGSLEEKLSKYRSDIVSLQLERDKLASEAKLAVEKLERFMKEFEHQNTQIHGLQDG NLEYSRLILDFQKRLNESMHAQNASEDHCRRLNMEVSTLKHEKEMLSNAEKRACDEVGRLSERVHRLQSSLGTLQSAEEVREEARAAERRKQEEHVQQIE REWVLAKKELELEKDNVRALTCGREQILKDAMKQVGEIGKELANALGAVTVAETRAAVAETKVEDLEKKLRISNQKAATDLIMLKEELEKLRQEAQTNKD YMVQYKNIAEVNEDALKQMEAAHENFKRKSEKLKESLEAELIALRGKISELENELRLKSEEVVALAAGNGETLTSALAEVTALKEEASNKMSQTAALEMQ VSVLKVDLEKEHDRWRSAQNNYERQVILQSETIQELTRTSQTLASLQEEATTLRKLADERELGNNELKAKWEAAQSMLEESRRESQKKYDELNEQNKVLH DRLEALHIKFAESHRSSAGVSSRNGVDSSDDGGLQKVVGYLRRSKEMAETERALLKQENSRLKSQLDNALKAAENAKVSLGAERANTRALIFSEEEMQSL QNQVMEMNLLRGNNMQLIEENKQNVEECQKLRDLAQESDAKAEELKLLLREKEKEIDACKKELEMLRADKVFLDNKISEKNNELEEAKNCMLKQQETLSK LEHDLGRSEVELKQRSNDLLEAEANIKSELERQKRQFTLNRRKLDNLTKQRDELIKEKNAANKQIEELKQAKKAIGNVGGEHSHKEKEDKTRLQILEKTV EKRREELKKAKDELRKEKEDHQMEKSKFADIYDKSREALRRVLDALEKLKHVEDALPEFLSGSVLDDLIAVCTSAIEIFGKEVNSLLGDLGQSTPSVETP SLDAPAPVSASETTSQIPLIPAASASQAAGKAAEEREKRFSAPQINASEGRKTARRLVRPSFSKTEEPQGDAEISEADGSSVEAKPAVLQDSEMQPNPTV SFQPLSRKRSLQSGIESSEQQINQGDAVPQGAVQMPKKAKLQESADGEVEVEPNTSAVDLTLDSTSDVIPDGLVSEKEDADVITGKKMEASKDAAEDVGE EEIQKTDISEKPSGTGMEIDESLKDEMVEEDQQPILESDGDREEGEMLPDVSEVEVSNTADSPESGEFVPETTPEGSPLKMEDETNSPLNAPNDEADITV EDTGEGSEKANDIGEPNVVETDPILESPPVVGDSTTKPSAEVVTVVKPRSPCAITAEEVKHPTPTLVNLTDRARQNAEKRLQRPAPTQPNASPPPSIPGN RGRARGGSVRGRGVQRTFRGGRTGRGGPSPGQPGQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10009940 [exp]	0	1
AT5G18230			transcription regulator NOT2/N...		Lus10020262 [exp]	6.9	0.8835
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10013587 [exp]	13.3	0.8871
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10015971 [exp]	16.9	0.8667
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10025508 [exp]	17.4	0.8824
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10029806 [exp]	17.7	0.8687
AT1G52640			Pentatricopeptide repeat (PPR)...		Lus10030603 [exp]	18.7	0.8475
AT3G06480			DEAD box RNA helicase family p...		Lus10009474 [exp]	20.2	0.8059
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Lus10038680 [exp]	21.6	0.8484
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10035427 [exp]	24.1	0.8590
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10020393 [exp]	25.0	0.8548

Compare expression of checked genes

Lus10009940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.