Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19855 205 / 3e-67 AtRbcX2 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) AT4G04330 47 / 1e-06 AtRbcX1 homologue of cyanobacterial RbcX 1, Chaperonin-like RbcX protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030141 [exp] 375 / 4e-134 AT5G19855 231 / 2e-77 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) Lus10002563 [exp] 244 / 1e-82 AT5G19855 202 / 1e-66 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) Lus10027363 [exp] 243 / 2e-82 AT5G19855 200 / 1e-65 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258100 [exp] 251 / 4e-85 AT5G19855 259 / 2e-88 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) Potri.009G053300 [exp] 244 / 2e-82 AT5G19855 230 / 4e-77 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02341 [flax] [poplar] RcbX RbcX protein
Representative CDS sequence Show only first row Show all	>Lus10009941 pacid=23150137 polypeptide=Lus10009941 locus=Lus10009941.g ID=Lus10009941.BGIv1.0 annot-version=v1.0 ATGGTGGGAGGAGCAGCTGCAGCTTTGGCTATGGTGGGTTCGTCCGTGGTGGATTATTCCCACACCACCTCCTCATGTTCCCTCCCTGAATTGGCCATGC ATAGGAATATTTATTCTACCAAGAGGAAACAATATGGGAAGTTGTCGACCACTGTCAAAATAAGCAATTCTTTTGCTATTCCTGGGATTGCCACCAAGCT TACTACAAGGAAGAAGAAGCAGCAGAGGAAAGGGCATCGGAGATTCGTCGTCGTCAGCGAGCTCGCTGGCCAGTACGAGGATAGTTTCGAGGACGTTAAG ACTCAAATACTCCACTATTTCACGTACAAGGCTGTCAGGACGGTTATGAACCAGCTGTACGAGATGAACCCAACTCACTACCGGTGGTTTTACGACTTTG TTGCCACGAATAAGCCTGGAAGTGGGAAGCATTTCATCCGTAACTTGGCCAAAGAGAGACAGGACCTTGCAGAAAGAGTAATGGTGACAAGGCTTCACCT CTATGGAAAATGGATCAAGAAATGTGACCATGCAGAGATGTACAAAGAGATTTCAGATGAGAACTTGGCGTTGATGCGTGAACGGCTTATGGAGACGGTG ATATGGCCATCGGACGACTCCAACACCGAGAAGATTGGCTGA
AA sequence Show only first row Show all	>Lus10009941 pacid=23150137 polypeptide=Lus10009941 locus=Lus10009941.g ID=Lus10009941.BGIv1.0 annot-version=v1.0 MVGGAAAALAMVGSSVVDYSHTTSSCSLPELAMHRNIYSTKRKQYGKLSTTVKISNSFAIPGIATKLTTRKKKQQRKGHRRFVVVSELAGQYEDSFEDVK TQILHYFTYKAVRTVMNQLYEMNPTHYRWFYDFVATNKPGSGKHFIRNLAKERQDLAERVMVTRLHLYGKWIKKCDHAEMYKEISDENLALMRERLMETV IWPSDDSNTEKIG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10009941 [exp]	0	1
AT5G15140			Galactose mutarotase-like supe...		Lus10007251 [exp]	8.1	0.8611
AT3G17800			Protein of unknown function (D...		Lus10017989 [exp]	15.9	0.8687
AT1G21000			PLATZ transcription factor fam...		Lus10040292 [exp]	24.3	0.8920
AT4G21990		3-Apr, PRH-26, ...	PAPS REDUCTASE HOMOLOG 26, APS...		Lus10015560 [exp]	26.1	0.8300
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10013488 [exp]	40.4	0.8389
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10019387 [exp]	43.0	0.8481
AT4G02920			unknown protein		Lus10027996 [exp]	53.2	0.8221
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Lus10031273 [exp]	70.0	0.8399
AT4G14030		SBP1	selenium-binding protein 1 (.1...		Lus10037336 [exp]	70.2	0.8649
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10015178 [exp]	83.8	0.8113

Compare expression of checked genes

Lus10009941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.