Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20890 302 / 8e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G66010 218 / 2e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030140 [exp] 461 / 7e-166 AT3G20890 300 / 8e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10009943 [exp] 410 / 7e-146 AT3G20890 328 / 9e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030139 [exp] 405 / 1e-143 AT3G20890 315 / 2e-108 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258000 [exp] 379 / 1e-133 AT3G20890 357 / 6e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G053200 [exp] 369 / 7e-130 AT3G20890 353 / 1e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G101200 [exp] 241 / 2e-79 AT5G66010 344 / 2e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10009942 pacid=23150083 polypeptide=Lus10009942 locus=Lus10009942.g ID=Lus10009942.BGIv1.0 annot-version=v1.0 ATGTCTTACAGAGGGTACGACCGTTTCTCCAGATCAAGCTACCTCCGCCATGATTTATCTGGTTCTTTTTTTGTCTCCTCTGGTGTGATTGCGGTTTCCC ATATTGACTCTCATTCTGATCCAAACCTGATATATCTCGATGGTGCTGATCTGCGTGAAATGAGTACAAAACGTCAGCGGATAGTTGATCAGGCACCCTC ATTCTTTGGGGCTACCCCAGGGACAAGCTTTATATACAATCAACCAACTTATGCTTACGTCGGCCAGCCTCCATCTTTCCCCGGTGTGCGACTCCGTGGC CTGCCCTTCGACTGTACAGATGCTGACGTGGCAGAATTCTTCCAGGGCCTAAACATAGTTGACGTCCTCTTCGTCCACAAGGGCGGCAAGTTCAGCGGGG AAGCATTCTGCGTGCTGGCCTACCCTCTTCAAGTTGATTTCGCACTTCAAAAGAACAGGCAAAACATGGGGAGGAGATACGTCGAGGTGTTCAGAACCAC AAGGCAAGACTATTACATGGCTGTAGCAAGCCAAGTGTCAGAAAATCGTGGTGGCAGTTCGCCAAGGCGGAGGTTTCCGCGAGCGAAGCCGTACGAAGAA GGGAAGGAATCGGTGGAGCACACGGGGGTGTTGCGGTTGAGGGGGCTGCCGTTTTCGGCAGGGAAAGATGAGATAGTGGAGTTTTTCGAAGACTATGCGA CGTTGTCGGAGAATTCGGTCCATATAGTTATGAATTTCGAAGGGAGACCGACGGGGGATGCGTTTGTGGAGTTTGCCAGTGCGGAAGATTCGAAGGCAGC AATGGGGAAACATAGGAAGACGTTGGGTAGTCGTTATATAGAGTTGTTTCCTTCGTCGGTAGAGGAATTAAGTGAAGCTTTGTCCAGAGGACGCTAA
AA sequence Show only first row Show all	>Lus10009942 pacid=23150083 polypeptide=Lus10009942 locus=Lus10009942.g ID=Lus10009942.BGIv1.0 annot-version=v1.0 MSYRGYDRFSRSSYLRHDLSGSFFVSSGVIAVSHIDSHSDPNLIYLDGADLREMSTKRQRIVDQAPSFFGATPGTSFIYNQPTYAYVGQPPSFPGVRLRG LPFDCTDADVAEFFQGLNIVDVLFVHKGGKFSGEAFCVLAYPLQVDFALQKNRQNMGRRYVEVFRTTRQDYYMAVASQVSENRGGSSPRRRFPRAKPYEE GKESVEHTGVLRLRGLPFSAGKDEIVEFFEDYATLSENSVHIVMNFEGRPTGDAFVEFASAEDSKAAMGKHRKTLGSRYIELFPSSVEELSEALSRGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10009942 [exp]	0	1
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10018426 [exp]	1.4	0.8964
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10031361 [exp]	2.6	0.9157
AT4G24730			Calcineurin-like metallo-phosp...		Lus10019465 [exp]	8.0	0.8737
AT1G26270			Phosphatidylinositol 3- and 4-...		Lus10000012 [exp]	11.5	0.8622
AT3G12620			Protein phosphatase 2C family ...		Lus10001976 [exp]	12.1	0.8772
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Lus10011261 [exp]	15.2	0.8513
AT2G45620			Nucleotidyltransferase family ...		Lus10009310 [exp]	15.7	0.8406
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10038108 [exp]	26.0	0.8670
AT1G21770			Acyl-CoA N-acyltransferases (N...		Lus10025670 [exp]	30.4	0.8699
AT1G11480			eukaryotic translation initiat...		Lus10039708 [exp]	30.9	0.8684

Compare expression of checked genes

Lus10009942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.