Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20890 327 / 2e-113 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G66010 244 / 3e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G45100 44 / 6e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G41690 44 / 6e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G48840 42 / 0.0002 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030139 [exp] 499 / 0 AT3G20890 315 / 2e-108 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030140 [exp] 423 / 9e-152 AT3G20890 300 / 8e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10009942 [exp] 424 / 3e-151 AT3G20890 313 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258000 [exp] 409 / 5e-146 AT3G20890 357 / 6e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G053200 [exp] 394 / 2e-140 AT3G20890 353 / 1e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G101200 [exp] 263 / 2e-88 AT5G66010 344 / 2e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10009943 pacid=23150099 polypeptide=Lus10009943 locus=Lus10009943.g ID=Lus10009943.BGIv1.0 annot-version=v1.0 ATGTTTCTCAGAGGGTATGGGGATGGTGCTGATGGCCGTGAAATGGGTGCAAAGCGTCAGCGGATGCTTGAACAAACTCCTTCATTCTTTGGAGCTACCC CAGGGACAAGCTTCATGTATAGTCAACCAACTTATGCTTACGTCGGCCAACCTCAAACTTTCCCAGTGGTTCGTCTTCGCGGCCTACCCTTTGACTGTAC AGACACGGATGTAGCGGAATTCTTCCAGGGACTAAACATAGTCGATATTCTATTCGTCCACAAGGGCGGAAAGTTCAGCGGCGAAGCATTTTGCGTACTT GGCTTCCCAATTCAAGTCGACTTTGCCCTGCAACGAAATCGGCAGAACATTGGGAGGAGATACGTCGAGGTGTTCAGAAGCACGAGGCAAGACTATTACA AGGCAATAGCAGGCGAGGTTTCGGAATATCGCGGGAGTTCACCGAAACAAACTTCCACACGAGCGAAATCGTACGATGAAGGGAAGGAATCGGCAGAGCA CACAGGGGTTTTGCGGTTGAGGGGACTGCCGTTTTCGGCAGGGAAGGATGATATAATAGAGTTCTTCAAAGACTATGCAGCTCTGTCGAAGAAATCGATC CATATAATGGTGAATTATGAGGGTAGAGCGACTGGGGACGCGTTTGTGGAGTTTGCAAGTGCTGATGATTCAAAGGTGGCGATGGGGAAAGATAGGAAGA CACTGGGGAGTCGTTACATTGAGTTGTTCCCTTCATCGGTGGAAGAGTTGCAAGAGGCTTTTGGCAGAGGGCGTTAA
AA sequence Show only first row Show all	>Lus10009943 pacid=23150099 polypeptide=Lus10009943 locus=Lus10009943.g ID=Lus10009943.BGIv1.0 annot-version=v1.0 MFLRGYGDGADGREMGAKRQRMLEQTPSFFGATPGTSFMYSQPTYAYVGQPQTFPVVRLRGLPFDCTDTDVAEFFQGLNIVDILFVHKGGKFSGEAFCVL GFPIQVDFALQRNRQNIGRRYVEVFRSTRQDYYKAIAGEVSEYRGSSPKQTSTRAKSYDEGKESAEHTGVLRLRGLPFSAGKDDIIEFFKDYAALSKKSI HIMVNYEGRATGDAFVEFASADDSKVAMGKDRKTLGSRYIELFPSSVEELQEAFGRGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10009943 [exp]	0	1
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Lus10004607 [exp]	3.5	0.8813
AT5G09570			Cox19-like CHCH family protein...		Lus10007086 [exp]	5.3	0.8700
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10007273 [exp]	7.1	0.8754
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10004139 [exp]	10.2	0.8883
AT3G29170			Eukaryotic protein of unknown ...		Lus10007465 [exp]	14.3	0.8626
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10029220 [exp]	14.5	0.8680
AT3G60380			unknown protein		Lus10028193 [exp]	15.6	0.7775
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10019794 [exp]	15.7	0.8247
AT1G31870			unknown protein		Lus10033140 [exp]	17.0	0.8637
AT5G18110		NCBP	novel cap-binding protein (.1)		Lus10005704 [exp]	17.7	0.8622

Compare expression of checked genes

Lus10009943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.