Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20920 486 / 1e-172 translocation protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030136 [exp] 715 / 0 AT3G20920 508 / 0.0 translocation protein-related (.1.2) Lus10014906 [exp] 553 / 0 AT3G20920 501 / 3e-179 translocation protein-related (.1.2) Lus10027362 [exp] 548 / 0 AT3G20920 498 / 4e-178 translocation protein-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G052800 [exp] 525 / 0 AT3G20920 451 / 5e-159 translocation protein-related (.1.2) Potri.001G257500 [exp] 514 / 0 AT3G20920 465 / 1e-164 translocation protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03839 [flax] [poplar] Sec62 Translocation protein Sec62
Representative CDS sequence Show only first row Show all	>Lus10009945 pacid=23150128 polypeptide=Lus10009945 locus=Lus10009945.g ID=Lus10009945.BGIv1.0 annot-version=v1.0 ATGCGAGAGATGAAGAAACCTGGAGGAGCTGACAAGAAAAGGGTTCGAAGATCGTCTGCTGCGCTACAGAACGGCTCCCGAGATCCCAATTCAGATGCTC CGCCTAGGCTTCTGAAATTGCTTCCGGTTGGCTTTCAGAAACAAGCCGCGAAGAAAGATGTGTTCCAGTTGTTTGCTGAGAAGGTGAGAGACCACAAGGA CTTGGTTTCTCGTTGGGCTGTTCTGCAGGAAACACGTGTGGAATATGTCAGGGGGAAAGACTTACTTAGTTTCCTGAAAAATCATCCAGAGGTGAAAGAG GTACTAGACTCTGGAAAGAACTTGGAGGTTGAAGAAATTGCCAATACTCTCTTGAGCAAGAACCTTCTGGTGCGTTGTGACCGTGTCGTGAAAACAATTC GTCCTGGGAAGAAAAAGTTGTCAACTTGGCCAGCACATTTAGAGATATTCCCGGATCAAGTTTTTTCAGATAACGATGCATTTTTTGCATGGGCATTTGT GAAACGAAGGCCACTTTGGCAAACGCTTCTCTCGTTCTTTTGGCCTGTCTTGACTCTGGCAATATGCTTGTTTCCTGTATATCCTCACCGGTGCAAGCTT TTGATTCTCTACTCTTGTGCTGGTGTCCTCTTGCTTATTCTCTCATTACTTCTATTGAGAGCCACTGTCTTTGGTGCTTTATATGTCCTTCTAGGAAAGC GAGTATGGTTCTTCCCTAACATCCTGGCTGAAGAAGCTACACTACGAGAATTGTTCCGGTTCTGGCCCCAGAAGGACGAGGAGGACCGCCCTAAGTGGAC AACAAGGCTTTTGTATACTGTTGTAGCTTTGTCAATTATATTGCTGCTAAGACACCATGCACCAGATGAAAAAGCTCGAGCTAGGTATCAGAAGAGGATG TCCAACATTATCGACGATGTGCTGGAGTGGTCGCCAAAGCTAGCGTTATCCGGGTTCATGGAGAAGCCACAGGATGTGGCAAATGTGACCGATTCAGGCA ACGATTATGCTGATGGTGGTAGTGAAGCACATTTGGGGCACACACCTGCAGCTGAGGATCCCGAGGAAGAAGCAATCTTGCCCGAGGAAGGAGGCACAGT GGACAGTAATGGAGAAGACAGGAGCAGTCATGAGAATGGAGGAGCAGAAAGCTCTGATCATGTATAA
AA sequence Show only first row Show all	>Lus10009945 pacid=23150128 polypeptide=Lus10009945 locus=Lus10009945.g ID=Lus10009945.BGIv1.0 annot-version=v1.0 MREMKKPGGADKKRVRRSSAALQNGSRDPNSDAPPRLLKLLPVGFQKQAAKKDVFQLFAEKVRDHKDLVSRWAVLQETRVEYVRGKDLLSFLKNHPEVKE VLDSGKNLEVEEIANTLLSKNLLVRCDRVVKTIRPGKKKLSTWPAHLEIFPDQVFSDNDAFFAWAFVKRRPLWQTLLSFFWPVLTLAICLFPVYPHRCKL LILYSCAGVLLLILSLLLLRATVFGALYVLLGKRVWFFPNILAEEATLRELFRFWPQKDEEDRPKWTTRLLYTVVALSIILLLRHHAPDEKARARYQKRM SNIIDDVLEWSPKLALSGFMEKPQDVANVTDSGNDYADGGSEAHLGHTPAAEDPEEEAILPEEGGTVDSNGEDRSSHENGGAESSDHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20920			translocation protein-related ...		Lus10009945 [exp]	0	1
AT5G10780			unknown protein		Lus10040473 [exp]	2.0	0.8984
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10023717 [exp]	2.4	0.8997
AT3G58800			unknown protein		Lus10007354 [exp]	3.5	0.8805
AT5G03460			unknown protein		Lus10014419 [exp]	5.7	0.8942
AT1G02070			unknown protein		Lus10009267 [exp]	6.3	0.8694
					Lus10009045 [exp]	7.1	0.8343
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10031101 [exp]	8.5	0.8635
AT1G77370			Glutaredoxin family protein (....		Lus10028355 [exp]	9.9	0.8617
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10038744 [exp]	10.6	0.8601
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10001021 [exp]	12.4	0.8597

Compare expression of checked genes

Lus10009945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.