Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01870 51 / 2e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030135 [exp] 230 / 4e-78 AT2G01870 73 / 1e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G257400 [exp] 81 / 2e-19 AT2G01870 90 / 8e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009946 pacid=23150139 polypeptide=Lus10009946 locus=Lus10009946.g ID=Lus10009946.BGIv1.0 annot-version=v1.0 ATGCGAACTTCATTATCTCCACAGCTCCCTCTTCTGCCCAAATATTACAAAACTCCAATCCATGGAACTGTAAACAGAGCAATCCCAGCTGCAGGAAGAG GAAGAAGGCCTTCTTGGACTGTTAATGCTGAAAACAACTCAAAACCACAACAACAACAACAACAGTATGAGATAGACCAAGATCAAGCCAAGCAAGCTCT TCAAAGGCTCGACCAACAGCTCCAACAATTCTCCACTAAGCAAATCGGCCCTCCAAAGCTCAAAGCGTCAGATGAACAGATTGTAAGGGAACAGATGAGA CAAGAATTGGTAGAAATTCCAGGGTCTGCAGTAGCGTATGGGGTGGCAGCTCTGTTTGCATTCGCTATATTCTATAATGTACTCTTCCTAACGGTCATAA AACCAGCCATTGATGGACCTGAGCTAATCCCCGGCGCAACCATCAGGGTCGAAATCGAACGTTTCGGTACTAGAATTTTGCAGCTGCCGTTCCCAGATGG CTTCCTGTAA
AA sequence Show only first row Show all	>Lus10009946 pacid=23150139 polypeptide=Lus10009946 locus=Lus10009946.g ID=Lus10009946.BGIv1.0 annot-version=v1.0 MRTSLSPQLPLLPKYYKTPIHGTVNRAIPAAGRGRRPSWTVNAENNSKPQQQQQQYEIDQDQAKQALQRLDQQLQQFSTKQIGPPKLKASDEQIVREQMR QELVEIPGSAVAYGVAALFAFAIFYNVLFLTVIKPAIDGPELIPGATIRVEIERFGTRILQLPFPDGFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01870			unknown protein		Lus10009946 [exp]	0	1
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10022449 [exp]	1.0	0.9452
AT5G15802			unknown protein		Lus10022232 [exp]	3.0	0.9366
AT1G49975			unknown protein		Lus10006137 [exp]	3.2	0.9384
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039429 [exp]	4.2	0.9253
AT5G27290			unknown protein		Lus10018966 [exp]	5.7	0.9360
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10019726 [exp]	6.5	0.8887
AT1G54680			unknown protein		Lus10018965 [exp]	7.9	0.9241
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10008411 [exp]	8.8	0.9196
AT1G54680			unknown protein		Lus10033821 [exp]	9.5	0.9146
AT1G60230			Radical SAM superfamily protei...		Lus10029159 [exp]	9.8	0.9143

Compare expression of checked genes

Lus10009946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.