Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19450 888 / 0 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT5G12480 887 / 0 CPK7 calmodulin-domain protein kinase 7 (.1.2) AT3G57530 822 / 0 ATCPK32, CDPK32, CPK32 calcium-dependent protein kinase 32 (.1) AT2G41860 795 / 0 CPK14 calcium-dependent protein kinase 14 (.1.2) AT1G74740 731 / 0 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT3G51850 727 / 0 CPK13 calcium-dependent protein kinase 13 (.1) AT1G18890 712 / 0 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT2G31500 658 / 0 CPK24 calcium-dependent protein kinase 24 (.1) AT5G12180 576 / 0 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 560 / 0 CPK34 calcium-dependent protein kinase 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030134 [exp] 981 / 0 AT5G19450 783 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10027361 [exp] 969 / 0 AT5G19450 909 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10014907 [exp] 965 / 0 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10042370 [exp] 811 / 0 AT3G57530 820 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10026742 [exp] 793 / 0 AT3G57530 793 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10004807 [exp] 736 / 0 AT3G51850 986 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10002482 [exp] 731 / 0 AT3G51850 979 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10027808 [exp] 729 / 0 AT3G51850 962 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10008631 [exp] 700 / 0 AT1G74740 886 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G257100 [exp] 908 / 0 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.009G052700 [exp] 905 / 0 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.016G054600 [exp] 857 / 0 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.006G052900 [exp] 852 / 0 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.012G071700 [exp] 760 / 0 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.015G066200 [exp] 753 / 0 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.016G117200 [exp] 737 / 0 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.006G101300 [exp] 723 / 0 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.007G127000 [exp] 664 / 0 AT2G31500 744 / 0.0 calcium-dependent protein kinase 24 (.1) Potri.006G200600 [exp] 553 / 0 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10009947 pacid=23150089 polypeptide=Lus10009947 locus=Lus10009947.g ID=Lus10009947.BGIv1.0 annot-version=v1.0 ATGGGGAACTGTTGCACAAGTCCTGCTACCAGTTCTCCCCATGGATCCCCAAGGAAGAGAAGAAGCAAAGAGAGAGCCAAGAACAAGAACAAAGGGAATC TATTCTCTGCTTCGTCTGATCATGATGTCAATGAATCCGGATCAAGTAATGATAATAATCTACACGTGTTGAAAGAACCTACGGGCCGCGATATCTCAGC TCATTATGATTTGGGTCGGGAGCTTGGTCGCGGTGAATTTGGGATCACGTATCTATGTACTGAAACAAACAGTGGCAACATGTATGCATGCAAATCTATT TCGAAGAAGAAACTCAGGACTGCTATTGATATTGAGGATGTGAGAAGGGAGGTGGAGATCATGAAGCACTTACCTCATCATCCGAATATCGTTTCGATTA AAGATACTTACGAGGATGACAATGCTGTCCATATTGTGATGGAACTTTGTGAAGGAGGGGAGTTGTTTGATAGGATTGTTGCGAGGGGCCATTACACTGA AAGGGCTGCCTCTGCCGTAATGCGAACCATTGTTGAAGTTCTTCAGATGTGTCACAAGCATAGTGTAATGCACCGTGATCTCAAGCCGGAGAACTTTCTG TTTACAAATAAGAAGGAAACATCCCCTTTAAAGGCAATTGATTTTGGGTTGTCAGTCTTCTTTAAACCTGAAGAGAGATTCAATGAGATAGTAGGAAGCC CTTATTACATGGCCCCTGAGGTCCTAAAGCGGAATTATGGGCCAGAAGTTGACGTGTGGAGTGCTGGAGTTATCCTATATATCTTACTTTGTGGAGTTCC ACCTTTCTGGGCAGAAACTGAACAGGGTGTAGCCCAAGCAATTATACGCTCAGTCATAGATTTCAAGAGGGATCCATGGCCTAAAGTTTCTGATAACGCA AAGGATCTTGTGAAGAAGATGCTGAATCCTGATCCTAAGCAACGCCTTACCGCTCAGCAAGTGCTTGACCATACTTGGCTACAGAATGCAAAGAAGGCCC CAAATGTTCCTTTAGGGGAGACTGTGCGAACAAGGCTCAAACAGTTCTCTATGATTAACAAACTCAAGAAAAGGGCACTGAGGGTGATAGCTGAGCATTT GTCAGTGGAGGAAGTTGCTGGCATAAAAGATGCATTTGACATGATGGACACTAGCAAAAAGGGGAAGATTAACATTGATGAGCTTCGAGTTGGATTGCAC AAGCTTGGCCAACAAATTACTGATCCAGATCTTCAAATCCTTATGGAAGCTGCTGACATTGATGGTGATGGTACTCTTAATTATGGAGAGTTTGTCGCGA TCAGCATTCACATAAAAACGATGGGAAATGAGGAGCACCTGCATAAAGCTTTCGGATTCTTCGATCAAAACAAGAGCGGTTACATTGAGATGCAGGAGTT ACGAGAAGCCTTAAATGATGAGTTCGAGTCTTGTAGTGAAGAAGTTCTGAATGCCATCATGCAAGATGTTGATACTGACAAGGATGGCTGCATAAGCTAC GAGGAATTCGCAGCGATGATGAAGGCAGGAACAGACTGGAGAAAAGCCTCGAGACAGTACTCGAGGGAAAGGTTCAACAGTCTAAGCTTAAAGTTAATGA GAGATGGTTCGTTGCAGGTAGCTAGTTAA
AA sequence Show only first row Show all	>Lus10009947 pacid=23150089 polypeptide=Lus10009947 locus=Lus10009947.g ID=Lus10009947.BGIv1.0 annot-version=v1.0 MGNCCTSPATSSPHGSPRKRRSKERAKNKNKGNLFSASSDHDVNESGSSNDNNLHVLKEPTGRDISAHYDLGRELGRGEFGITYLCTETNSGNMYACKSI SKKKLRTAIDIEDVRREVEIMKHLPHHPNIVSIKDTYEDDNAVHIVMELCEGGELFDRIVARGHYTERAASAVMRTIVEVLQMCHKHSVMHRDLKPENFL FTNKKETSPLKAIDFGLSVFFKPEERFNEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVIDFKRDPWPKVSDNA KDLVKKMLNPDPKQRLTAQQVLDHTWLQNAKKAPNVPLGETVRTRLKQFSMINKLKKRALRVIAEHLSVEEVAGIKDAFDMMDTSKKGKINIDELRVGLH KLGQQITDPDLQILMEAADIDGDGTLNYGEFVAISIHIKTMGNEEHLHKAFGFFDQNKSGYIEMQELREALNDEFESCSEEVLNAIMQDVDTDKDGCISY EEFAAMMKAGTDWRKASRQYSRERFNSLSLKLMRDGSLQVAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10009947 [exp]	0	1
AT4G30550		GGP3	gamma-glutamyl peptidase 3, Cl...		Lus10015493 [exp]	7.5	0.8970
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10023568 [exp]	8.1	0.8914
AT2G14520			CBS domain-containing protein ...		Lus10020494 [exp]	9.0	0.7600
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Lus10042464 [exp]	12.0	0.8882
					Lus10017955 [exp]	16.1	0.8879
					Lus10018837 [exp]	17.6	0.8865
AT2G24960			unknown protein		Lus10042421 [exp]	20.3	0.8837
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10026811 [exp]	20.7	0.8835
AT5G45275			Major facilitator superfamily ...		Lus10033280 [exp]	21.6	0.8765
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10041597 [exp]	22.7	0.8215

Compare expression of checked genes

Lus10009947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.